RNA id: TU45650


Basic Information

Item Value
RNA id TU45650
length 1609
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id LOC122343159
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 24636352 ~ 24638654 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCGTCTGTGCTTTTAAACTTTTCATAGAGAGCTGGTGGTAAACGAATGAATTAGTTACCGAAACACACCATGTACCTAAAAAGGGCTAAACTTCATTTAGCTTGAAGGAAGGACATGCCATGTTCACACCCACCTTCCTTCAAGCTGACAAATAGCAGTCTCAgccctttttctctttcattcgcACAAgctcaagaaatctccaagGTTTGATGCTCGACGCAAACTGTTTGCAGGAACCAAGCACAAAAATCTAGTCCGTATTTAAAAGGGAAGTGAAACTCACGACACGTCAACAGCACTCGCTCACCCAAACCAGAACGCTTAGCATGGTGGTTTCTTCACGTAATGGCGGATGAATTCACAGCTTTATTGTAACAGAAGTGGTTGATTATCTCTCGGATCAAGGAGTCCTTTGTATGTTTTCAGGATGAGAACGGAGGTTTTCCTTGTGCTCCTCGTGACTCTGGCGTTCAGCGACGGATTGGATAACATCGGGATCAGCTACAATCAGTCTGACTTTTTTAACTTTGCACCCTGTCAGATCTCCTTTAATAACAATGcgtataattattttatgtatcaaCATATCCTCCCAAATAATTTTGATGTGAACAACCCAATGAACTGGCAAGGATACCTCTCAAGTACAGGTCTGTGTGGAAGAAAACCTGTACAGTCCTTCCTCAGCGGCGCTGATATCACGGGATTGTGAACATCTGCAACGGACAAGGCATCAATGTCAGATATAACACCTGCACCAGTATAAACGCTTTTCTGGTGTACATTGTTCAAAGTGGTTGGGCAAATGGAGTGTGTAGTGTTACTGGAATTTTTTACAACTATTATTACGTGACCGTTGCTTGTGATAAGATTAATAACTATTGTTTGCCCGTTCACTATGAGACACAAAGTCCCTGGCCACCAGACATACACGGTGTGATCTGCAGACCTTAGCAGAAGTCACATTAACTGTTACCTTGAAAGAGTCCTTCTCATAACTGCTCACGACTAAGCTCTTGTAAggcattttttagttttcatatctttaaatgaatttgttatGCAGTGTCTTTTAACTGATTTGTGTACAGATCTTACGAAACAGGATACAATTCCTTTTGAAACTAAGCAAATAAATCTTCAGATCTACTTTCGACAGAGGGAGCAAAAGAAATTAAGAAGTTACcgtataattaaataattcatgttttaacCTTTTATCGTTTTTTCTGTTGCATCATTCATGTGTGTAAAATAGTTTAAGCTATGTTCGCATATTTCTCTATGTCCTAGACACACTATTTGTGAATAGAAAGCTTGGATACTGGCTAGTAAAAGAGCGGCAGAATCACACAGAATGTAAAGTGCACATAAAATAATGGCGCTCCCTCATAATCCAGAAACTATGCATCTTTCATGGGTTTCTATCacatatttcagtaagagaCCTAATATAAAACACCCAGAGATCCCTTTAAATGATACGATTTTGATTAATGCAGAGTTTCTCTGATGTTACTTAATGTCCTCAAGTCCTTTTTAGTTTATACAAGCACATTAGAAGTCACATAAATAAACGAATGAGGGCTTGTGTCCTTAAATCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45587 lncRNA upstream 149477 24456022 ~ 24486887 (+) True G30812
XR_006250692.1 lncRNA upstream 216796 24417843 ~ 24419568 (+) True LOC122343172
TU45595 lncRNA upstream 322076 24310339 ~ 24314288 (+) True G30819
TU45594 lncRNA upstream 322076 24313194 ~ 24314288 (+) False G30819
TU45514 lncRNA upstream 626473 24003642 ~ 24009891 (+) True G30754
TU45666 lncRNA downstream 34313 24672967 ~ 24673594 (+) False LOC122343086
TU45676 lncRNA downstream 76043 24714697 ~ 24714998 (+) True G30877
TU46134 lncRNA downstream 350213 24988867 ~ 24989274 (+) True G31223
TU46137 lncRNA downstream 675569 25314223 ~ 25314596 (+) True G31226
TU46139 lncRNA downstream 676525 25315179 ~ 25315553 (+) True G31228
XM_043237169.1 mRNA upstream 16973 24607037 ~ 24619391 (+) True LOC122342946
XM_043237238.1 mRNA upstream 30547 24595853 ~ 24605817 (+) True LOC122342982
XM_043237279.1 mRNA upstream 54570 24577163 ~ 24581794 (+) True LOC122343010
XM_043237321.1 mRNA upstream 61932 24569118 ~ 24574432 (+) False LOC122343032
XM_043237478.1 mRNA downstream 435 24639089 ~ 24646601 (+) False LOC122343125
XM_043237438.1 mRNA downstream 10313 24648967 ~ 24653215 (+) True LOC122343105
XM_043237419.1 mRNA downstream 23175 24661829 ~ 24665576 (+) False LOC122343093
XM_043237418.1 mRNA downstream 23230 24661884 ~ 24665576 (+) True LOC122343093
XM_043237436.1 mRNA downstream 29052 24667706 ~ 24672151 (+) False LOC122343104
XR_006250668.1 other upstream 165497 24465454 ~ 24470867 (+) False LOC122343023
XR_006250669.1 other upstream 169964 24454325 ~ 24466400 (+) False LOC122343028
XR_006250666.1 other upstream 494953 24133050 ~ 24141411 (+) False LOC122342990
XR_006250665.1 other upstream 513544 24117289 ~ 24122820 (+) False LOC122342976
TU45342 other upstream 1469107 23163769 ~ 23167257 (+) False LOC122342321
TU45653 other downstream 1475 24640129 ~ 24646571 (+) True LOC122343125
TU45681 other downstream 82770 24721424 ~ 24728447 (+) True G30882
XR_006250558.1 other downstream 105194 24743848 ~ 24767552 (+) False LOC122342408
XR_006250648.1 other downstream 996388 25635042 ~ 25684620 (+) False LOC122342771
XR_006250647.1 other downstream 996391 25635045 ~ 25688230 (+) False LOC122342771

Expression Profile