RNA id: TU45676



Basic Information


Item Value
RNA id TU45676
length 302
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G30877
representative True

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 24714697 ~ 24714998 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


AAAATATCTAGGAGTGTATGTTGGCAATAATCTAATGCTAAGTAAAAATTGGGAAGATGTTCTAGATAAAGTAAAAGGACGATTGCAAAAATGGAAATGGCTCTtgccaaaaatgtcttttagagGGAGggttataataattaataatctgGTGGCTTCAGTGATGTGGCATCGTTTGGCCTGCATTGATCCTCCAAATGGACTTTTGAGCAGAATTCAAGCCTTTCTAGTGGACTGTGGCGGACAGGCCCGCGGAGGACCGTCCTGTGGTGGACAGGCCCGCGGAGGACCGGCCTGTGGCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU45666 lncRNA upstream 41103 24672967 ~ 24673594 (+) False LOC122343086
TU45650 lncRNA upstream 76043 24636364 ~ 24638654 (+) True LOC122343159
XR_006250675.1 lncRNA upstream 76431 24636352 ~ 24638266 (+) False LOC122343159
TU45587 lncRNA upstream 227810 24456022 ~ 24486887 (+) True G30812
XR_006250692.1 lncRNA upstream 295129 24417843 ~ 24419568 (+) True LOC122343172
TU46134 lncRNA downstream 273869 24988867 ~ 24989274 (+) True G31223
TU46137 lncRNA downstream 599225 25314223 ~ 25314596 (+) True G31226
TU46139 lncRNA downstream 600181 25315179 ~ 25315553 (+) True G31228
TU46232 lncRNA downstream 965143 25680141 ~ 25685985 (+) True LOC122342771
TU46335 lncRNA downstream 1072382 25787380 ~ 25787901 (+) True G31380
XM_043237250.1 mRNA upstream 26717 24679922 ~ 24687980 (+) True LOC122342991
XM_043237405.1 mRNA upstream 40285 24672891 ~ 24674412 (+) True LOC122343086
XM_043237436.1 mRNA upstream 42546 24667706 ~ 24672151 (+) False LOC122343104
XM_043237437.1 mRNA upstream 42546 24667741 ~ 24672151 (+) True LOC122343104
XM_043237419.1 mRNA upstream 49121 24661829 ~ 24665576 (+) False LOC122343093
XM_043236178.1 mRNA downstream 28850 24743848 ~ 24767256 (+) True LOC122342408
XM_043236179.1 mRNA downstream 28850 24743848 ~ 24752393 (+) False LOC122342408
XM_043236193.1 mRNA downstream 55634 24770632 ~ 24782341 (+) True LOC122342420
XM_043236409.1 mRNA downstream 802398 25517396 ~ 25553833 (+) False zmp:0000000926
XM_043236415.1 mRNA downstream 802404 25517402 ~ 25553833 (+) False zmp:0000000926
TU45653 other upstream 68126 24640129 ~ 24646571 (+) True LOC122343125
TU45649 other upstream 76043 24636364 ~ 24638654 (+) False LOC122343159
XR_006250668.1 other upstream 243830 24465454 ~ 24470867 (+) False LOC122343023
XR_006250669.1 other upstream 248297 24454325 ~ 24466400 (+) False LOC122343028
XR_006250666.1 other upstream 573286 24133050 ~ 24141411 (+) False LOC122342990
TU45681 other downstream 6426 24721424 ~ 24728447 (+) True G30882
XR_006250558.1 other downstream 28850 24743848 ~ 24767552 (+) False LOC122342408
XR_006250648.1 other downstream 920044 25635042 ~ 25684620 (+) False LOC122342771
XR_006250647.1 other downstream 920047 25635045 ~ 25688230 (+) False LOC122342771
TU46238 other downstream 978804 25693802 ~ 25695381 (+) True G31298

Expression Profile