RNA id: TU45768


Basic Information

Item Value
RNA id TU45768
length 1096
RNA type TUCP
GC content 0.42
exon number 4
gene id LOC122342328
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 23416891 ~ 23437015 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGTTTACACCTGATCGTTTTTTCTGATCGAAAAACCGTAACCGTATTAACCTAATcctgatttttaatgtttatgcggggacatacatgaacataaagagaaaacaaagacattttgagaagttgtctagaaactgaacgttttgatcaaagcaagtcttcagctgtggagcagaaagacacttccttattcatAGTCAGTGTTGAAGATCAAACTGTTCAGATCCatcatgaatgaaacacaaacatctggAGATGAAGAGTATTCTCCAGCCTGCAGctcagttcatcagaagagatcagaagcaGAGCCCAGCTGTGTTTCTATGAAGAGTGACAGGTCTATGGAACAGCCAGTGAAGTTTAAGAGTGAAGATTCACAGCCTGGACTTGGctcagttcatcagaagagatcagaagcagagtccagctgtgtgtctatgaagagaGAGACATCTGTGATTCAGTCTTTAGATTTTAAGAGAAGAGTCCTCGACACACTTAGATCAAATCTGCTGAAGAAgtttgagtgtctgtgtgaggaaCAGCAATGACGCAGAGAAACCCAACACTGCTGAATgagatctacacagagctctacatcacagagagtgagagaggagagatcaaTAATGAGCATGAGGTGAGACAGATTGAGACACAATCCAGGAGAGAAGCAACAGAGGACACAGCCATCAAATGCAGTGACATCTTCAGACCTTTACCTGGACAAGACAAAGACATCAGAACTGTGCTGACAAAGggagtcgctggcattggaaaaacagtctctgtgcagaagttcattctggactgggcCGAAGGGAAAGAGAATCAGGACGTCCAGCTcatatttccacttcctttcagagaaatcaacTTGATGAAGGACAAAACACTCAGTCTTTCAGATCTTCTTCACGACTTTTTCCCTGAaactaaagaaatggaaatatccagcgatgaatataaagtgttgttcatctttgatggtctggacgaGTGTCGTCTGTCTCTGGACTTCAAGAGTAAAGTGAAACTGTGTAATATATCTGAGTCAGCCTCAGTGgatgtgctgctgatgaacctgattgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45844 lncRNA downstream 37707 23391679 ~ 23397273 (-) True G31012
TU45824 lncRNA downstream 168122 23266625 ~ 23266858 (-) True G30994
TU45823 lncRNA downstream 168850 23265758 ~ 23266130 (-) True G30993
TU45822 lncRNA downstream 170764 23263732 ~ 23264216 (-) True G30992
TU45790 lncRNA downstream 381360 23051748 ~ 23053620 (-) True G30967
XR_006250676.1 lncRNA upstream 17262 23454277 ~ 23455816 (-) True LOC122343160
TU45858 lncRNA upstream 21712 23458727 ~ 23471751 (-) True G31020
TU45864 lncRNA upstream 37240 23474255 ~ 23474823 (-) True G31024
TU45850 lncRNA upstream 41510 23478525 ~ 23493889 (-) True G31017
TU45851 lncRNA upstream 49599 23486614 ~ 23489938 (-) False G31017
XM_043237389.1 mRNA downstream 175661 23256365 ~ 23259319 (-) False LOC122343073
XM_043237390.1 mRNA downstream 175661 23256365 ~ 23259319 (-) True LOC122343073
XM_043236116.1 mRNA downstream 184366 23240075 ~ 23250614 (-) True LOC122342325
XM_043236115.1 mRNA downstream 197900 23230042 ~ 23237080 (-) True LOC122342324
XM_043236114.1 mRNA downstream 215807 23201470 ~ 23219173 (-) True LOC122342323
XM_043237441.1 mRNA upstream 288737 23725752 ~ 23727918 (-) True LOC122343107
XM_043237481.1 mRNA upstream 379834 23816849 ~ 23929534 (-) True LOC122343128
XM_043237483.1 mRNA upstream 379883 23816898 ~ 23929534 (-) False LOC122343128
XM_043237254.1 mRNA upstream 770640 24207655 ~ 24220008 (-) True LOC122342994
XM_043237510.1 mRNA upstream 828334 24265349 ~ 24266607 (-) True LOC122343156
TU45110 other downstream 1189820 22128454 ~ 22245160 (-) True G30450
TU45123 other downstream 1218510 22216035 ~ 22216470 (-) True G30457
TU45011 other downstream 1658174 21629617 ~ 21776806 (-) True G30396
TU44977 other downstream 1694650 21737091 ~ 21740330 (-) True G30372
TU45006 other downstream 2048543 21383469 ~ 21386437 (-) True G30395
TU45855 other upstream 60114 23497129 ~ 23546369 (-) False G31017
TU45890 other upstream 308471 23745486 ~ 23771768 (-) True G31050
TU45934 other upstream 673209 24110224 ~ 24110673 (-) True G31091
TU46017 other upstream 867081 24304096 ~ 24497596 (-) True G31134
TU45989 other upstream 869486 24306501 ~ 24495178 (-) True G31120

Expression Profile