RNA id: TU45822


Basic Information

Item Value
RNA id TU45822
length 485
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G30992
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 23263732 ~ 23264216 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAACCTGAATATTTCAGAGGATAACTGGCGGCAAATTTGTAAATCACAATGGGAATCTACAAGTTCAGCAACATGGAGAGAATTCTGTTGGAAGAATgttattcgtttttttattacacCTATCCAGAAACTTCATAGAGGAGATAGTACTGATTGTTGGAGACTATGTGGGGAGAGGCGAGCTAGCCACTATCATATTTTTTGGGCATGTCAAAAACTAACCCCTTACTGGCAAgagattaaaaacaatttagaagCGGTTTTTGAAATAGAGATAGATTTTAATTGTGAATCTTTGTATTTTggtaatattactttaaaagggGGAACCAATAAGGATAAAAAGCTGTTGTTAATTCTGTTGGCAGCCAGTAAAAAAGGAATTACTAGAAAATGGTTAAAACCAGAACCACCTACAGTGGTAGAATGGATTGATAtagtgcataatatatatgtcaTGGAAAAATTATCGTTCtcaataaaaa

Function

GO: NA

KEGG:

id description
ko04668 TNF signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45790 lncRNA downstream 210112 23051748 ~ 23053620 (-) True G30967
TU45749 lncRNA downstream 402112 22858259 ~ 22861620 (-) False G30938
TU45751 lncRNA downstream 402112 22858259 ~ 22861620 (-) True G30938
TU45737 lncRNA downstream 474430 22787546 ~ 22789302 (-) True G30926
TU45728 lncRNA downstream 490878 22770855 ~ 22772854 (-) True G30920
TU45823 lncRNA upstream 1542 23265758 ~ 23266130 (-) True G30993
TU45824 lncRNA upstream 2409 23266625 ~ 23266858 (-) True G30994
TU45844 lncRNA upstream 127463 23391679 ~ 23397273 (-) True G31012
XR_006250676.1 lncRNA upstream 190061 23454277 ~ 23455816 (-) True LOC122343160
TU45858 lncRNA upstream 194511 23458727 ~ 23471751 (-) True G31020
XM_043237389.1 mRNA downstream 4413 23256365 ~ 23259319 (-) False LOC122343073
XM_043237390.1 mRNA downstream 4413 23256365 ~ 23259319 (-) True LOC122343073
XM_043236116.1 mRNA downstream 13118 23240075 ~ 23250614 (-) True LOC122342325
XM_043236115.1 mRNA downstream 26652 23230042 ~ 23237080 (-) True LOC122342324
XM_043236114.1 mRNA downstream 44559 23201470 ~ 23219173 (-) True LOC122342323
XM_043236117.1 mRNA upstream 152675 23416891 ~ 23435525 (-) True LOC122342328
XM_043237441.1 mRNA upstream 461536 23725752 ~ 23727918 (-) True LOC122343107
XM_043237481.1 mRNA upstream 552633 23816849 ~ 23929534 (-) True LOC122343128
XM_043237483.1 mRNA upstream 552682 23816898 ~ 23929534 (-) False LOC122343128
XM_043237254.1 mRNA upstream 943439 24207655 ~ 24220008 (-) True LOC122342994
TU45110 other downstream 1018572 22128454 ~ 22245160 (-) True G30450
TU45123 other downstream 1047262 22216035 ~ 22216470 (-) True G30457
TU45011 other downstream 1486926 21629617 ~ 21776806 (-) True G30396
TU44977 other downstream 1523402 21737091 ~ 21740330 (-) True G30372
TU45006 other downstream 1877295 21383469 ~ 21386437 (-) True G30395
TU45768 other upstream 170764 23434980 ~ 23437015 (-) False LOC122342328
TU45855 other upstream 232913 23497129 ~ 23546369 (-) False G31017
TU45890 other upstream 481270 23745486 ~ 23771768 (-) True G31050
TU45934 other upstream 846008 24110224 ~ 24110673 (-) True G31091
TU46017 other upstream 1039880 24304096 ~ 24497596 (-) True G31134

Expression Profile