RNA id: TU45851


Basic Information

Item Value
RNA id TU45851
length 1892
lncRNA type inter_gene
GC content 0.41
exon number 4
gene id G31017
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 23478525 ~ 23546369 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

agaatggcatctacgctaatattagtcctgtttctttctcaatctgttttcacagtttgtatccagactagatggtggatcagcacccagagattatgttcatcagagaccagaaaacctagatgcacccgtcgacagatcaccagatcctgatgcacacacacacacgcacacgcacacactaagtcatttacactacctgacacagctgcgtttaaaattgaactggaagttaagtgctgggcgtccggtcagaggagaactgaccccaactgagtctggtttctcccaaggtttttttttctccattctgtatgcatggggttttgtttccttgcgctgtcgcctctggcttgcttggttggggacacttaacttctagtgactatcgttgaattgactgcagagaccgtctctgcatttaataagaaattggtcactcgtcactactatacatccctgtcattatactgtacagtgctttgatgcaacctgtgttgttaaaagcgctatataaataaaaatgattgaaaaaatgATTGATGTGCATTACCTGGTTATCACGCTGTTTTAAAGTTCTGTTGTTTTTACGCCTGTAGGTGAGGGCTTCCTTGGAATGAACATCTTCAGCGCTATAACCACGGCATTGccatcattttacttttaatagatTTGGTTATAGCAGCGTTGAATTACTGCGGTGATTTTGACTGTTATTTGAACATCAAGTATGAGACTCTCTTAAAGGGAATCAGAGGTGTGTTGCTGATATTCTCCGTGCTTGAGTTCATcatctccatctgtctgtcagcGTTCGCCTGTAAAGCCGACGCCTGCTGCTGTCCTCCTCAGGTGCAGTTTGCTCAGGTTTTACCTCCACAGTTGTCTGATGTGGTTCGTTTCCAGGATCTGAACAGATCAGAGaTACCCGTGACCAGCAGCTCTTTCATTCATCAACATCCTGCAGACGTTCCTCCACAATACACTGAAAGCAAatatgaataagtgttccctcaaaaaaaaaggaacgtACATGTAACCCAGATTACTAGTGCATAAACAAGTGCATACTAGTACATTAACTCGCaatgatattaattaaataatagttgtttttttaaaaaaaaaaagaaccaaaacataaacatgactgtgaacaaaaaaatataaaatatcaaagttatAATTGTGACCAATAGCGCCTTCTTTCACTTCGCAATGAGGTCGCGGGTGAATGACGTCATAGGGTCCGCCATCGCGCAATTTTTAGAGAGCAGAGGATTCGCTATCGTTCTCTTTCCTCGTGAGCCTCTCATGTGAGCAGATGTGAGATGCAGTTTCGGAAGATTCAAGCCACCGAAATGAGAGAGATTAAGGTCAGAGAAGCTGAAGGCAATTGAGAGTGACGTCTGAAACAGGGTTCATCTGCAAATGTCCTGGTTCATTTGATGTACATGTATATTAGTTCCTTGGCCAGGTTTTCTTCCCTTTATTCTGCTCTTGTTCCATGTGAGTCCCTTTCCTGGATGAATCGGCTGAAGTGAGAACTATTCTTGAACTGTCTCAACTCTTCATATAACTGCAGTGTGGAGTTGGACTGGCGAGCCCTCCTTTAAGCAAATCTTTGAAACCTTTGCGTGAATTTCACCTGTTGGACAGACACAGGAACTAAACTTGCAGACCTTCAACTGGTAGGAGTGAAATTGCACAGTTCATTTTGTCCTGATCTGGAGTGGAGACTAAAGACTGAGATTACCATCAATTAATTGACATTTGAGACTGAATTTCTGAATcctcaggtttttatttttatttttatttcatccttttgtgtttgtaaattttaatttcttttattcattgtaACAATACAAATCAAATTTTGCTCTTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45864 lncRNA downstream 11791 23474255 ~ 23474823 (-) True G31024
TU45858 lncRNA downstream 14863 23458727 ~ 23471751 (-) True G31020
XR_006250676.1 lncRNA downstream 30798 23454277 ~ 23455816 (-) True LOC122343160
TU45844 lncRNA downstream 89341 23391679 ~ 23397273 (-) True G31012
TU45824 lncRNA downstream 219756 23266625 ~ 23266858 (-) True G30994
XR_006250712.1 lncRNA upstream 4388 23494326 ~ 23496751 (-) True LOC122343190
XR_006250704.1 lncRNA upstream 184188 23674126 ~ 23675958 (-) False LOC122343181
XR_006250703.1 lncRNA upstream 184188 23674126 ~ 23675868 (-) True LOC122343181
TU45886 lncRNA upstream 184207 23674145 ~ 23675795 (-) False LOC122343181
XR_006250723.1 lncRNA upstream 238097 23728035 ~ 23731996 (-) True LOC122343201
XM_043236117.1 mRNA downstream 51089 23416891 ~ 23435525 (-) True LOC122342328
XM_043237389.1 mRNA downstream 227295 23256365 ~ 23259319 (-) False LOC122343073
XM_043237390.1 mRNA downstream 227295 23256365 ~ 23259319 (-) True LOC122343073
XM_043236116.1 mRNA downstream 236000 23240075 ~ 23250614 (-) True LOC122342325
XM_043236115.1 mRNA downstream 249534 23230042 ~ 23237080 (-) True LOC122342324
XM_043237441.1 mRNA upstream 235814 23725752 ~ 23727918 (-) True LOC122343107
XM_043237481.1 mRNA upstream 326911 23816849 ~ 23929534 (-) True LOC122343128
XM_043237483.1 mRNA upstream 326960 23816898 ~ 23929534 (-) False LOC122343128
XM_043237254.1 mRNA upstream 717717 24207655 ~ 24220008 (-) True LOC122342994
XM_043237510.1 mRNA upstream 775411 24265349 ~ 24266607 (-) True LOC122343156
TU45768 other downstream 49599 23434980 ~ 23437015 (-) False LOC122342328
TU45110 other downstream 1241454 22128454 ~ 22245160 (-) True G30450
TU45123 other downstream 1270144 22216035 ~ 22216470 (-) True G30457
TU45011 other downstream 1709808 21629617 ~ 21776806 (-) True G30396
TU45855 other upstream 7191 23497129 ~ 23546369 (-) False G31017
TU45890 other upstream 255548 23745486 ~ 23771768 (-) True G31050
TU45934 other upstream 620286 24110224 ~ 24110673 (-) True G31091
TU46017 other upstream 814158 24304096 ~ 24497596 (-) True G31134
TU45989 other upstream 816563 24306501 ~ 24495178 (-) True G31120

Expression Profile