RNA id: TU45858



Basic Information


Item Value
RNA id TU45858
length 746
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id G31020
representative True

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 23458727 ~ 23471751 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


aataagtcatttattatcatgatcgtttaataaattgtgtttatttgtaaaatgacCAGCTTCTCCTCGTAGCCTCAGCACTGCTCTAAACAGGAAGAACCTTgctgagaaaaagaaagtgaaagcaGATTATGTTTTACATGCGACGTTTACACTTGATCGTAAgaacttttcttcattttcaaaaactgatcattcatcttttatttgttcttgtGGGAAGATACATAAACTTCATGAGAAagcaaagacattttgagaagttgtctagaaactgaacgttttgatcaaagcaagtcttcagctgtggagcagaaagacacttccttattcatTTTCAGCTCAattcatcagaagagatcagaagcagagtccagctgtgtgtctatgaagagaGAGACCTCTGGGATTCAGTCTTTAGATTTTAAGAGAGGAGATACACGACCGGTTCTCAGtcatgAAGTCCTCACCACATTAAGATCAAATCTGCTGAAGAAgtttgagtgtctgtgtgagggaACAGCGACGCAGAGAAACCCAACACTGCTGAATgagatctacacagagctctacatcacagagaaaACTAAtaggaaaaatgtgtttatcaagTTGAAAAGCTtgcaatgtaattttaatataattatcctgtgtttgtttatatgaacCCTGGAATCGAAAGGGTAGAGATTTATACTGTATCATCTTAAAGCTGCATAAATAAAAGTTGATGTGTATCAAAAGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_006250676.1 lncRNA downstream 2911 23454277 ~ 23455816 (-) True LOC122343160
TU45844 lncRNA downstream 61454 23391679 ~ 23397273 (-) True G31012
TU45824 lncRNA downstream 191869 23266625 ~ 23266858 (-) True G30994
TU45823 lncRNA downstream 192597 23265758 ~ 23266130 (-) True G30993
TU45822 lncRNA downstream 194511 23263732 ~ 23264216 (-) True G30992
TU45864 lncRNA upstream 2504 23474255 ~ 23474823 (-) True G31024
TU45850 lncRNA upstream 6774 23478525 ~ 23493889 (-) True G31017
TU45851 lncRNA upstream 14863 23486614 ~ 23489938 (-) False G31017
XR_006250712.1 lncRNA upstream 22575 23494326 ~ 23496751 (-) True LOC122343190
XR_006250704.1 lncRNA upstream 202375 23674126 ~ 23675958 (-) False LOC122343181
XM_043236117.1 mRNA downstream 23202 23416891 ~ 23435525 (-) True LOC122342328
XM_043237389.1 mRNA downstream 199408 23256365 ~ 23259319 (-) False LOC122343073
XM_043237390.1 mRNA downstream 199408 23256365 ~ 23259319 (-) True LOC122343073
XM_043236116.1 mRNA downstream 208113 23240075 ~ 23250614 (-) True LOC122342325
XM_043236115.1 mRNA downstream 221647 23230042 ~ 23237080 (-) True LOC122342324
XM_043237441.1 mRNA upstream 254001 23725752 ~ 23727918 (-) True LOC122343107
XM_043237481.1 mRNA upstream 345098 23816849 ~ 23929534 (-) True LOC122343128
XM_043237483.1 mRNA upstream 345147 23816898 ~ 23929534 (-) False LOC122343128
XM_043237254.1 mRNA upstream 735904 24207655 ~ 24220008 (-) True LOC122342994
XM_043237510.1 mRNA upstream 793598 24265349 ~ 24266607 (-) True LOC122343156
TU45768 other downstream 21712 23434980 ~ 23437015 (-) False LOC122342328
TU45110 other downstream 1213567 22128454 ~ 22245160 (-) True G30450
TU45123 other downstream 1242257 22216035 ~ 22216470 (-) True G30457
TU45011 other downstream 1681921 21629617 ~ 21776806 (-) True G30396
TU45855 other upstream 25378 23497129 ~ 23546369 (-) False G31017
TU45890 other upstream 273735 23745486 ~ 23771768 (-) True G31050
TU45934 other upstream 638473 24110224 ~ 24110673 (-) True G31091
TU46017 other upstream 832345 24304096 ~ 24497596 (-) True G31134
TU45989 other upstream 834750 24306501 ~ 24495178 (-) True G31120

Expression Profile