RNA id: TU45931


Basic Information

Item Value
RNA id TU45931
length 716
lncRNA type inter_gene
GC content 0.56
exon number 3
gene id G31088
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 24126947 ~ 24127908 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGTGTTTTTATCACTGAGAGCGAGTCTGATTCTGGGTCAGATGCATGTATCATGTACCAGAGGCGCAGCAGCAGTAGGTTGTAGAGCTTGTCCTCACTGATGGAGCGTGGCACACTCAGCAGGAAGGGCCGGCCGAACAGCGGCGTGCTGGTTTGGTTGAAGCCCGACTGCTTGTACTTCTCCCGCAGGTGGACGGGGATCAGAACGTGCTGTGTGTCCTCCAGCCGGCCGACGGACACCTCGACACGTAGATGTCGTCCCGCTCCATGATGCTGCTCAGGTTCTCGTTGCTGCTGAAGATCCGGTGGAACCTGTGGTTGTAGATGTCCGTCACGATCATCTAGACACGGCAGAGGAAGCTCAGTGAACGCACTGAAGATCTGCAGATGACAGACTCCTCACACAGACCTTACCTTCTTAGCCGAGACGCCCGACAGAATCGAAAGAGATGCACACAGATCAGAGATGCTGCCCACTTTAGGAACCGTCAGCTTCTGAGTGGGTTTAGCCAGCGGGTCCAGCCACACCAGATACACCTCCAGCGTCCGCTCCTTCTTCATTGGCAGAGGCAGCGTCAGGTAGCAgaaggggtcaaaggtcactgaGATCTTGGCACACACGGGACACACCAGAGTGGACTTGAAGAGGCCGTGGAAGATATCCACGATGATGGAGTCGTTCCTCTTGATGTGGTTCTCCCAGGCCTCCTCTGCCA

Function

GO: NA

KEGG:

id description
ko04710 Circadian rhythm

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45933 lncRNA downstream 1286 24122812 ~ 24125661 (-) True G31090
TU45925 lncRNA downstream 26080 24100450 ~ 24100867 (-) True G31082
TU45912 lncRNA downstream 90196 24036349 ~ 24036751 (-) True G31072
TU45903 lncRNA downstream 116897 24003692 ~ 24010050 (-) True G31063
XR_006250687.1 lncRNA upstream 84159 24212067 ~ 24215572 (-) False LOC122343167
XR_006250686.1 lncRNA upstream 84159 24212067 ~ 24215572 (-) True LOC122343167
XR_006250685.1 lncRNA upstream 84159 24212067 ~ 24215369 (-) False LOC122343167
TU45958 lncRNA upstream 121928 24249836 ~ 24426069 (-) True G31109
TU45956 lncRNA upstream 123548 24251456 ~ 24259462 (-) False G31109
XM_043237481.1 mRNA downstream 197413 23816849 ~ 23929534 (-) True LOC122343128
XM_043237483.1 mRNA downstream 197413 23816898 ~ 23929534 (-) False LOC122343128
XM_043237441.1 mRNA downstream 399029 23725752 ~ 23727918 (-) True LOC122343107
XM_043236117.1 mRNA downstream 691422 23416891 ~ 23435525 (-) True LOC122342328
XM_043237390.1 mRNA downstream 867628 23256365 ~ 23259319 (-) True LOC122343073
XM_043237254.1 mRNA upstream 79747 24207655 ~ 24220008 (-) True LOC122342994
XM_043237510.1 mRNA upstream 137441 24265349 ~ 24266607 (-) True LOC122343156
XM_043236125.1 mRNA upstream 184934 24312842 ~ 24319112 (-) True LOC122342338
XM_043236128.1 mRNA upstream 197480 24325388 ~ 24327263 (-) True LOC122342340
XM_043237349.1 mRNA upstream 349088 24476996 ~ 24479914 (-) True ckap4
TU45934 other downstream 16274 24110224 ~ 24110673 (-) True G31091
TU45890 other downstream 355179 23745486 ~ 23771768 (-) True G31050
TU45855 other downstream 580578 23497129 ~ 23546369 (-) False G31017
TU45768 other downstream 689932 23434980 ~ 23437015 (-) False LOC122342328
TU45123 other downstream 1910477 22216035 ~ 22216470 (-) True G30457
TU46017 other upstream 176188 24304096 ~ 24497596 (-) True G31134
TU45989 other upstream 178593 24306501 ~ 24495178 (-) True G31120
TU46025 other upstream 196062 24323970 ~ 24327232 (-) False LOC122342340
TU46026 other upstream 197876 24325784 ~ 24327232 (-) False LOC122342340
TU46027 other upstream 198887 24326795 ~ 24327232 (-) False LOC122342340

Expression Profile