RNA id: TU45956



Basic Information


Item Value
RNA id TU45956
length 924
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G31109
representative False

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 24249836 ~ 24426069 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GTGCAGATAACTGTTAAAATTGCCAATTTGCTCAGTGTGACAGGAATGAGTTTTCCAGTGTCGTTTCAGGTCTGTGTGATACGTGAAGCTGGTGTCACACTGAGGACActtgtaaggcttctctccagtgtgaattctcatgtgaaTCTTAAGATTTCCTTTAGCCgtgaagctctttccacactgaggacAGGTGAAGGGTTTCTCTCCGGAGTGAGTTCTCATGTGATTCTCAAAGTTTCCTTTGTGTgagaaactcttcccacactgctGACATATAAAACAGTTCTCTCCCGAGTGACTCTTCATGTGAAGATCAAGGTGTCCTTTACACCTGAAACTCTTTTCACACAGATCACAAACAAACggcttctctcccgtgtgaATTGTCATGTGATCATTGAGGTACTTCTTCTgtttaaaactctttccacactgagagcagatGAACGTTTTCTCTCCGCTGTGAATTCCTGTGTGAAATGTAagattttcctttcttttgtaGCTCTTCCCACACAGTTCACAAGTGTAAGgtctctctccagtgtggagTTTGGGTTTTCTAGTCGATGAGTAAGAACTAGATTCTTCTCCAGTCATGAAATCATTATGTTTGTCAAACTGATTTTTCTCTTCTATTACTTTGGATTCTTGTCTATCCTCTTTCAGCGTCATCAGGTCTGGAGTgaaaagaaacataaaacaagACAACACCAGTTTAAAAGCACCAAGACGTGAAAGCTTTTAGACAGTAAAACGTCACATTTAACCACTAGATTATACATCcactaaacaaataaagcacctcttaaaataaatcaaacataaaTCAGGATCAGgcagtttatttaatttcaataatttgaTATAAACCTTGACGTAAACTACCGCCAAAGATTTATGGGAGCAAGCAAATATTTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_006250687.1 lncRNA downstream 35884 24212067 ~ 24215572 (-) False LOC122343167
XR_006250686.1 lncRNA downstream 35884 24212067 ~ 24215572 (-) True LOC122343167
XR_006250685.1 lncRNA downstream 36087 24212067 ~ 24215369 (-) False LOC122343167
TU45931 lncRNA downstream 123548 24126947 ~ 24127908 (-) True G31088
TU45933 lncRNA downstream 125795 24122812 ~ 24125661 (-) True G31090
TU45968 lncRNA upstream 39318 24298780 ~ 24502175 (-) False G31115
TU45970 lncRNA upstream 39318 24298780 ~ 24540339 (-) False G31115
TU46010 lncRNA upstream 45793 24305255 ~ 24312292 (-) True G31127
XR_006250702.1 lncRNA upstream 54328 24313790 ~ 24314321 (-) True LOC122343180
TU46029 lncRNA upstream 72415 24331877 ~ 24332563 (-) True G31142
XM_043237254.1 mRNA downstream 31448 24207655 ~ 24220008 (-) True LOC122342994
XM_043237481.1 mRNA downstream 321922 23816849 ~ 23929534 (-) True LOC122343128
XM_043237483.1 mRNA downstream 321922 23816898 ~ 23929534 (-) False LOC122343128
XM_043237441.1 mRNA downstream 523538 23725752 ~ 23727918 (-) True LOC122343107
XM_043236117.1 mRNA downstream 815931 23416891 ~ 23435525 (-) True LOC122342328
XM_043237510.1 mRNA upstream 5887 24265349 ~ 24266607 (-) True LOC122343156
XM_043236125.1 mRNA upstream 53380 24312842 ~ 24319112 (-) True LOC122342338
XM_043236128.1 mRNA upstream 65926 24325388 ~ 24327263 (-) True LOC122342340
XM_043237349.1 mRNA upstream 217534 24476996 ~ 24479914 (-) True ckap4
XM_043237444.1 mRNA upstream 225900 24485362 ~ 24492499 (-) True LOC122343108
TU45934 other downstream 140783 24110224 ~ 24110673 (-) True G31091
TU45890 other downstream 479688 23745486 ~ 23771768 (-) True G31050
TU45855 other downstream 705087 23497129 ~ 23546369 (-) False G31017
TU45768 other downstream 814441 23434980 ~ 23437015 (-) False LOC122342328
TU45123 other downstream 2034986 22216035 ~ 22216470 (-) True G30457
TU46017 other upstream 44634 24304096 ~ 24497596 (-) True G31134
TU45989 other upstream 47039 24306501 ~ 24495178 (-) True G31120
TU46025 other upstream 64508 24323970 ~ 24327232 (-) False LOC122342340
TU46026 other upstream 66322 24325784 ~ 24327232 (-) False LOC122342340
TU46027 other upstream 67333 24326795 ~ 24327232 (-) False LOC122342340

Expression Profile