RNA id: TU45958


Basic Information

Item Value
RNA id TU45958
length 2835
lncRNA type read_through
GC content 0.39
exon number 3
gene id G31109
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 24249836 ~ 24426069 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCATTGTGAATAAAAGTTGGGCTTGCAAGTTTAGAAATCtgaattttattagttttatagaGAATGTCACTGTGATCTTTCCTGACATAGCTGTAATAATTACTAAGATGGCACATTCAGATGGGAATAAAATCACTGAGCTCTAGTAATACTTTATTGCACCTCTCCATGTAAAACTAGTCCTGTCTAAATAGGACTCAACACATGAGGTTTGATACGAATGTGTTCATTGATCTGATCTCAACTCAATCATCTTTCTTCAGAGGAAATGTTCAGGTGATTGTTGTAACACTATCTTCCTCCGTGTGGCATGAAGTTGGGAAACTCTCTCCAGAATGAGTCTGCATATGACGCTTGAGGTTTGTGTGATGCGTGAAGCTGGTGTCACACTGAGGACActtgtaaggcttctctccagtgtgaactctcatgtgaGTCTTAAAGTTTCCTTTAGCCgtgaagctctttccacactgaggacagGTGAAGGGTTTCTCTCCGGAGTGAGTTCTCATGTGATTCTCAAAGTTTCCTTTGTGTgagaaactcttcccacactgctGACATATAAAACAGTTCTCTCCCGAGTGACTCTTCATGTGAAGATCAAGGTGTCCTTTACACCTGAAACTCTTTTCACACAGATCACAAACAAACggcttctctcccgtgtgaATTGTCATGTGATCATTGAGGTACTTCTTCTgtttaaaactctttccacactgagagcagatGAACGTTTTCTCTCCGCTGTGAATTCCTGTGTGAAATGTAagattttcctttcttttgtaGCTCTTCCCACACAGTTCACAAGTGTAAGgtctctctccagtgtggagTTTGGGTTTTCTAGTCGATGAGTAAGAACTAGATTCTTCTCCAGTCATGAAATCATTATGTTTGTCAAACTGATTTTTCTCTTCTATTACTTTGGATTCTTGTCTATCCTCTTTCAGCGTCATCAGGTCTGGAGTgaaaagaaacataaaacaagACAACACCAGTTTAAAAGCACCAAGACGTGAAAGCTTTTAGACAGTAAAACGTCACATTTAACCACTAGATTATACATCcactaaacaaataaagcacctcttaaaataaatcaaacataaaTCAGGATCAGgcagtttatttaatttcaataatttgaTATAAACCTTGACGTAAACTACCGCCAAAGATTTATGGGAGCAAGCAAATATTTGTGTTAATCTGTAGCTGGGGAGTTAACTATTAGCTTTGTCAACTATATGTTCAAGTTACATTTGGGCATTTACCAGAGTCTACCAAAAAATCACTAATTAAGACAACAGAaccaatcaaaaccaacaaaagagcaataatatgCAGTAATAGTGACTAACGTGAGTCTATTGCATAAGTATTAAAACCCTTATCTGACGTTACCCTATGGCAAATTAATCTGAATGGATATGATTTGGAAACGCTCACACATCttaataaaaagtctaaaagctaaaagaaaaaaaagctgtagaGCTCAGAAACAGCATCAATCTGGTGAAGATCTGGCCTTTTGGCCAAACTGAGCAATCGCTGGACTTGGGTTGGAGTGGTGCCTAAGAAGCCGATGGTCGCTCTAGCTGAGCTCCATCATCATATGTAGAGATAGagaaacatacacaaacatttgcaaaggagcacctaaagtgccctcagACTCTGAGAAACAATGTTCTGTGGACGGATCAACCTCGATTTCAAGCCTCTTGTTAGAAAGGAGACCTGCAGAGTTGTCTTCTTAAACGTTCCTCAGATCTCTACTAACAGGCACTCGACACATCAGTAGCAGGGTTACATGCTGACTTCTCCCAGCAATCGTCTCTGACGTGAACAACAGTGTGATGACGCACAAGACTCCAGGATCATCATCCCTTTGGTTTCCCACATTCCTCAGAAGAgcttttatgttcaacagaaACACTTGTAAATGACAACTTTTAGTTTTTtcgaagaaataaataaatagcttttaagttaataaaatgagacacaaagagaaaaataacGCACTACTTTTGGCACCTctacttaccctcatgttgttccaaacaaataaggggtatgaatactttcgcTAGACACCGTCCTCAGCATAGCTTTGGTGTTTTGGACAGAAGCTCaatcacagaaattaattttctcacaggtttgatggtcttgtgtgtgtgtgtgtgtgtggcgtgagcacacacatttgtataatattatgtGATGCTtggaaatgaacatttttatatgtatgtctTTTTATATGACGCTAAAGCAGAATGTGGCTAACCTGATAGCTTGGTGATTATAGTTCACATTTATATCCATGTGCGTGAAccaaaaaattacacacaaacagcagaTTCACCGTTTCTGATGTtagcaaataaacattttcagaagAGGAGATCTTTGTGATTGGTTAGCTGTCCTGTCAATCAAATACTGGAACATTACTTCATTGTGCGCACACTTCCGTTAAACTCTACCTCAGAAAATAATATCCAACTCTTCCAGAAAGAGTTAAACCAACCTGTTTCTTCCATCTTCACGTCTCCTCGCTCCTCTTTAAGAAACGATATCTCCGCTCGTTTCTCCTCAAGATCTTCTGGTTCATCTTCGATCTTCACgtcttctctctcctccttgATAAAGGCCATCTTTATAACGGCGCCTCGGTCTCTTCAGCGAGGGTTTGAGATGAGAATAAATATCTGATCTTGATATGAGGACTCCTTCACTTGAAGGGATCCTGTCTTTTATCCCGTGTACGGCCCAGACCGACGAATCCTTGAGAGCTCCATTCGTTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250687.1 lncRNA downstream 34264 24212067 ~ 24215572 (-) False LOC122343167
XR_006250686.1 lncRNA downstream 34264 24212067 ~ 24215572 (-) True LOC122343167
XR_006250685.1 lncRNA downstream 34467 24212067 ~ 24215369 (-) False LOC122343167
TU45931 lncRNA downstream 121928 24126947 ~ 24127908 (-) True G31088
TU45933 lncRNA downstream 124175 24122812 ~ 24125661 (-) True G31090
XR_006250677.1 lncRNA upstream 19460 24445529 ~ 24448290 (-) True LOC122343161
TU46005 lncRNA upstream 27392 24453461 ~ 24464894 (-) True G31124
TU45999 lncRNA upstream 31345 24457414 ~ 24458259 (-) True G31121
TU46045 lncRNA upstream 39294 24465363 ~ 24466556 (-) True G31155
TU46046 lncRNA upstream 39294 24465363 ~ 24466556 (-) False G31155
XM_043237254.1 mRNA downstream 29828 24207655 ~ 24220008 (-) True LOC122342994
XM_043237481.1 mRNA downstream 320302 23816849 ~ 23929534 (-) True LOC122343128
XM_043237483.1 mRNA downstream 320302 23816898 ~ 23929534 (-) False LOC122343128
XM_043237441.1 mRNA downstream 521918 23725752 ~ 23727918 (-) True LOC122343107
XM_043236117.1 mRNA downstream 814311 23416891 ~ 23435525 (-) True LOC122342328
XM_043237349.1 mRNA upstream 50927 24476996 ~ 24479914 (-) True ckap4
XM_043237444.1 mRNA upstream 59293 24485362 ~ 24492499 (-) True LOC122343108
XM_043237443.1 mRNA upstream 60365 24486434 ~ 24491446 (-) False LOC122343108
XM_043236131.1 mRNA upstream 116069 24542138 ~ 24544170 (-) True LOC122342346
XM_043237262.1 mRNA upstream 132063 24558132 ~ 24564000 (-) True LOC122342998
TU45934 other downstream 139163 24110224 ~ 24110673 (-) True G31091
TU45890 other downstream 478068 23745486 ~ 23771768 (-) True G31050
TU45855 other downstream 703467 23497129 ~ 23546369 (-) False G31017
TU45768 other downstream 812821 23434980 ~ 23437015 (-) False LOC122342328
TU45123 other downstream 2033366 22216035 ~ 22216470 (-) True G30457
TU46123 other upstream 332931 24759000 ~ 24760786 (-) False LOC122342407
XR_006250852.1 other upstream 925920 25351989 ~ 25352153 (-) True LOC122343864
XR_006250869.1 other upstream 926330 25352399 ~ 25352587 (-) True LOC122343882
XR_006250841.1 other upstream 927852 25353921 ~ 25354084 (-) True LOC122343852
XR_006250860.1 other upstream 928268 25354337 ~ 25354527 (-) True LOC122343873

Expression Profile