RNA id: TU45989


Basic Information

Item Value
RNA id TU45989
length 1412
RNA type TUCP
GC content 0.59
exon number 6
gene id G31120
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 24306501 ~ 24495178 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGATGAAGCAGTTGATGCCGTGCTTGAGGATGCGCTCCACCTTCTCCTTCATCTTCTCCTTCTCAGCTGACTCGATCTCAGCCACTTTGGCGGTGGAGTCCACACGCACCCTGGAGCCGAagatctgcacacacacacacacacacacacacacacacacacacacacacacacacacacacactagcgtCAGCTTACAGCCCCGTCACGCCCGTGCTCGTCCTCACTCAGAGACCACAGCACCTTGATCTTGTCCGTGTCCATGCCCGTGTTGGCGATCAGGATGTTGGCGTTCTCGATCCTCTTGGGCTGGTTTACTCCGATCCTCTTGTCCAGCAGGAACCTTCGTCCAGGTAGGAGTCGGTGAGGCTGGCTCCCAGCTTCTTGATGACGTGGATGGCCTCCAGGTTGCCAGATCCCTTGAGTCTGAGCACGGCCTCGACGGCGAGCCGGGAGAAGTGGTCCTTGTGGTGCGTCAGGAGCTTGGAGGAGAGCGTGGTGCGAGCGATGTTCATCAGGTCCTGCTGGAACTGCTGCTCGTCGCTCCTGCGGAGGGACACGCTGACCTTTAacctctgtcacacacacacacacacactgagagagagagcagctcGTTACCCATGATCCACGGCGGCCTCCCGGAGCGCCTCACGGGCCGCCTGCGTGGACTTCCTCCAGCCGGAGATGATGATCTGAGGGTGGATCTTCTTAGCGATCAGCAGCTCGGCTTCCTGCGGCACAAAAGTCAGAGGTCACAGAGCAGCGAGGAGCGGCGgcgtgaggaagaggaggaggaagagctcGTACCCGCAGCAGCTCGGCCCGTGAGGCGCTCCGGGAGGCCGCCGTGGATCATGGGAGCGACGAGCAGCAGTTCCAGCAGGACCTGATGAACATCGCTCGCACCACGCTCTCCTCCAAGCTCCTGACGCACCACAAGGACCACTTCTCGGCTCGCCGTGAGGGGCGTGCTCAGACTCAAGGGATCTGGCAGCCTGGAGGCCATCCACGTCATCAGAAGCTGGGAGCCAGCCTCACCGACTCCTACCTGGACGAAGGTTTCCTGCTGGACAAGAGGATCGGAGTAAACCAGCCCAAGAGGATCGAGAACGCCAACATCCTGATCGCTAACACGGGCATGGACACGGACAAGATCAAGatctTCGGCTCCAGGGTGCGTGTGGACTCCACCGCCAAAGTGGCTGAGATCGAGTCAGCTGAAggagaagaagatgaaggagaAAGGTGGAAGCGCATCCTCAAGCACGGCATCAACTGCTTCATCAACAGGTGctcctgtctctctgtgtgtgtgtgtgtctctctctgtgtgttttctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45956 lncRNA downstream 47039 24251456 ~ 24259462 (-) False G31109
TU45957 lncRNA downstream 47039 24251705 ~ 24259462 (-) False G31109
XR_006250687.1 lncRNA downstream 90929 24212067 ~ 24215572 (-) False LOC122343167
XR_006250686.1 lncRNA downstream 90929 24212067 ~ 24215572 (-) True LOC122343167
XR_006250685.1 lncRNA downstream 91132 24212067 ~ 24215369 (-) False LOC122343167
TU45967 lncRNA upstream 5674 24500852 ~ 24502175 (-) True G31115
TU46052 lncRNA upstream 18778 24513956 ~ 24552855 (-) True G31161
TU46065 lncRNA upstream 58240 24553418 ~ 24683082 (-) True G31165
TU46063 lncRNA upstream 58270 24553448 ~ 24683082 (-) False G31165
TU46084 lncRNA upstream 141083 24636261 ~ 24639737 (-) True G31179
XM_043237510.1 mRNA downstream 39894 24265349 ~ 24266607 (-) True LOC122343156
XM_043237254.1 mRNA downstream 86493 24207655 ~ 24220008 (-) True LOC122342994
XM_043237481.1 mRNA downstream 376967 23816849 ~ 23929534 (-) True LOC122343128
XM_043237483.1 mRNA downstream 376967 23816898 ~ 23929534 (-) False LOC122343128
XM_043237441.1 mRNA downstream 578583 23725752 ~ 23727918 (-) True LOC122343107
XM_043236131.1 mRNA upstream 46960 24542138 ~ 24544170 (-) True LOC122342346
XM_043237262.1 mRNA upstream 62954 24558132 ~ 24564000 (-) True LOC122342998
XM_043237239.1 mRNA upstream 87789 24582967 ~ 24593953 (-) True LOC122342983
XM_043237376.1 mRNA upstream 131886 24627064 ~ 24631306 (-) False LOC122343065
XM_043237383.1 mRNA upstream 131886 24627064 ~ 24630716 (-) False LOC122343065
TU45934 other downstream 195828 24110224 ~ 24110673 (-) True G31091
TU45890 other downstream 534733 23745486 ~ 23771768 (-) True G31050
TU45855 other downstream 760132 23497129 ~ 23546369 (-) False G31017
TU45768 other downstream 869486 23434980 ~ 23437015 (-) False LOC122342328
TU45123 other downstream 2090031 22216035 ~ 22216470 (-) True G30457
TU46123 other upstream 263822 24759000 ~ 24760786 (-) False LOC122342407
XR_006250852.1 other upstream 856811 25351989 ~ 25352153 (-) True LOC122343864
XR_006250869.1 other upstream 857221 25352399 ~ 25352587 (-) True LOC122343882
XR_006250841.1 other upstream 858743 25353921 ~ 25354084 (-) True LOC122343852
XR_006250860.1 other upstream 859159 25354337 ~ 25354527 (-) True LOC122343873

Expression Profile