RNA id: XM_043236128.1


Basic Information

Item Value
RNA id XM_043236128.1
length 911
RNA type mRNA
GC content 0.72
exon number 3
gene id LOC122342340
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 24323970 ~ 24327263 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTGATTGGCTTTCAGCGGAACGGCTGCGTGGCGGCTTCAGCAGCTGACGAGAGAAACTCCTCAAACTCCTCGAGCAGAATGACTTCCGCTTTCCTCTAGAGCCCCGTCTTCACGAGTCATGCAGCGGCAGAAGAGCGCGAGCAAGCCGCAGGACGGGGAGaagcggcggcggcggcggagcGAGGACGAGGGGCGTTCGGTGGCGTTCAGCCCCGACGCGAGGCTCTGCGTCAGTCTGCTGTGTCTCTCGCTGTGTCTCTTCATCACATGGCTGCACGTCCAGCAGAGCGCGACGCTCGCGGAGATCTCCCAGAAGTACGAGCGCCTGCGCGGGCTGGAGGAGACGCTCTCCGCGGTGTCTCTGGAGCTGCAGGCCTCCTCGTCCTCCGTCAGCTCCGCGCTCCAGTCCTGGGCGGCGCTGCGGGCGGAGCAGGAGGCGTCCGAGCTCCTCCTGCGGTCCCTGGCGGAGCGCGCACGGAGCCTGACGGAGGCGCAGCGGAGCCCTGAGCCGGAGGAGCTGCGAGGCGCCGCGGGCCGCCACGGAGCGTGGGCGCAGCAGCTGAACGACGCCGGCAGGCGCCTCCAGGCGCTGAGCCGCTGCAGGAGGTGCAGGACGGGACGGCGCGAACGGCCGGGCGCTGGAGCGCAGCGAGAGGAGGACGCCCGGCGGCTGAGCGACCGGCTGGACTGGAGCGACGACGCCGTCTCCAAGCTCCCGCGGCAGCTGCGCGCCTGGAGGAGCGGGTCTGGAGCTCGCGGGCGCCTGGACAGCCGCGCTCCTGTCCGCGACACACCCTCGCCGCCGAGGACGCCGCCCGCTCCGTGCTCCGGCTCGGCGCGCGGCTCAGCGCCACCTACGGCCGGCTGGAGGAGCTGCAGGAGCGGGTGCGGAGCGCCGAGGAACACGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250702.1 lncRNA downstream 11067 24313790 ~ 24314321 (-) True LOC122343180
TU46010 lncRNA downstream 13096 24305255 ~ 24312292 (-) True G31127
TU45956 lncRNA downstream 65926 24251456 ~ 24259462 (-) False G31109
TU45957 lncRNA downstream 65926 24251705 ~ 24259462 (-) False G31109
XR_006250687.1 lncRNA downstream 109816 24212067 ~ 24215572 (-) False LOC122343167
TU46029 lncRNA upstream 4614 24331877 ~ 24332563 (-) True G31142
TU46039 lncRNA upstream 97664 24424927 ~ 24433401 (-) True G31152
TU46040 lncRNA upstream 97664 24424927 ~ 24433401 (-) False G31152
XR_006250677.1 lncRNA upstream 118266 24445529 ~ 24448290 (-) True LOC122343161
TU46005 lncRNA upstream 126198 24453461 ~ 24464894 (-) True G31124
XM_043236125.1 mRNA downstream 6276 24312842 ~ 24319112 (-) True LOC122342338
XM_043237510.1 mRNA downstream 58781 24265349 ~ 24266607 (-) True LOC122343156
XM_043237254.1 mRNA downstream 105380 24207655 ~ 24220008 (-) True LOC122342994
XM_043237481.1 mRNA downstream 395854 23816849 ~ 23929534 (-) True LOC122343128
XM_043237483.1 mRNA downstream 395854 23816898 ~ 23929534 (-) False LOC122343128
XM_043237349.1 mRNA upstream 149733 24476996 ~ 24479914 (-) True ckap4
XM_043237444.1 mRNA upstream 158099 24485362 ~ 24492499 (-) True LOC122343108
XM_043237443.1 mRNA upstream 159171 24486434 ~ 24491446 (-) False LOC122343108
XM_043236131.1 mRNA upstream 214875 24542138 ~ 24544170 (-) True LOC122342346
XM_043237262.1 mRNA upstream 230869 24558132 ~ 24564000 (-) True LOC122342998
TU45934 other downstream 214715 24110224 ~ 24110673 (-) True G31091
TU45890 other downstream 553620 23745486 ~ 23771768 (-) True G31050
TU45855 other downstream 779019 23497129 ~ 23546369 (-) False G31017
TU45768 other downstream 888373 23434980 ~ 23437015 (-) False LOC122342328
TU45123 other downstream 2108918 22216035 ~ 22216470 (-) True G30457
TU46123 other upstream 431737 24759000 ~ 24760786 (-) False LOC122342407
XR_006250852.1 other upstream 1024726 25351989 ~ 25352153 (-) True LOC122343864
XR_006250869.1 other upstream 1025136 25352399 ~ 25352587 (-) True LOC122343882
XR_006250841.1 other upstream 1026658 25353921 ~ 25354084 (-) True LOC122343852
XR_006250860.1 other upstream 1027074 25354337 ~ 25354527 (-) True LOC122343873