RNA id: TU46040


Basic Information

Item Value
RNA id TU46040
length 1396
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G31152
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 24424927 ~ 24433401 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATGTCAAAGTCTCACGCTACCAAGTGGGCCCTAGGGCTGTTACACAAGACATGTTTTTCCCTATTGATCACACTTATTCACCCTATAGGTGAAATCATACTGACTGTACATATTTACAGCTAATATATTAGTGTGGGATTAGCATTACCCAAGGTCACCGTGATCTTAACTGACAttgtacaaaattatatattactggTAATACTTCATTGCACCTCTTCACGTAAAACTAGTCCTGTCGGAATAAGACTTAAAGAGTACAATCGGGTGCATTCATAGGGCGACTATGTGTGCCATTTTTCCCAGACACGTCCTTGCCAGCATCTGTATTCTGATTCaaagtacattttgaaaacataaggaaCCAATGTCATACACCGATCTGTGAAttacaaagccaaaacctagatattttaggctATATAGGACTCCTGGCTAGGATGTGTCTGCGCCAGGGAAAAATGACTTATGGTGACCCTAATGAATGTGCtaatgcaatgttttaattGGACTCAGAACTGAATTGTCTTTCTTCTGAGGGAATGTGCAGATAACTGTTAAAATTGCCAATTTGCTCAGTGTGACAGGAATGAGTTTTCCAGTGTCGTTTCAGGTCTGTGTGATACGTGAAGCTGGTGTCACACTGAGGACActtgtaaggcttctctccagtgtgaattctcatgtgaaTCTTAAGATTTCCTTTAGCCgtgaagctctttccacactgaggacAGGTGAAGGGTTTCTCTCCGGAGTGAGTTCTCATGTGATTCTCAAAGTTTCCTTTGTGTgagaaactcttcccacactgctGACATATAAAACAGTTCTCTCCCGAGTGACTCTTCATGTGAAGATCAAGGTGTCCTTTACACCTGAAACTCTTTTCACACAGATCACAAACAAACggcttctctcccgtgtgaATTGTCATGTGATCATTGAGGTACTTCTTCTgtttaaaactctttccacactgagagcagatGAACGTTTTCTCTCCGCTGTGAATTCCTGTGTGAAATGTAagattttcctttcttttgtaGCTCTTCCCACACAGTTCACAAGTGTAAGgtctctctccagtgtggagTTTGGGTTTTCTAGTCGATGAGTAAGAACTAGATTCTTCTCCAGTCATGAAATCATTATGTTTGTCAAACTGATTTTTCTCTTCTATTACTTTGGATTCTTGTCTATCCTCTTTCAGCGTCATCAGGTCTGGAGTgaaaagaaacataaaacaagACAACACCAGTTTAAAAGCACCAAGACGTGAAAGCTTTTAGACAGTAAAACGTCACATTTAACCACTAGATTATACATCcactaaacaaataaagcacctcttaaaataaatcaaacataaaTCAGGATCAGgcagtttat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46029 lncRNA downstream 92364 24331877 ~ 24332563 (-) True G31142
XR_006250702.1 lncRNA downstream 110606 24313790 ~ 24314321 (-) True LOC122343180
TU46010 lncRNA downstream 112635 24305255 ~ 24312292 (-) True G31127
TU45956 lncRNA downstream 165465 24251456 ~ 24259462 (-) False G31109
TU45957 lncRNA downstream 165465 24251705 ~ 24259462 (-) False G31109
XR_006250677.1 lncRNA upstream 12128 24445529 ~ 24448290 (-) True LOC122343161
TU46005 lncRNA upstream 20060 24453461 ~ 24464894 (-) True G31124
TU45999 lncRNA upstream 24013 24457414 ~ 24458259 (-) True G31121
TU46045 lncRNA upstream 31962 24465363 ~ 24466556 (-) True G31155
TU46046 lncRNA upstream 31962 24465363 ~ 24466556 (-) False G31155
XM_043236128.1 mRNA downstream 97664 24325388 ~ 24327263 (-) True LOC122342340
XM_043236125.1 mRNA downstream 105815 24312842 ~ 24319112 (-) True LOC122342338
XM_043237510.1 mRNA downstream 158320 24265349 ~ 24266607 (-) True LOC122343156
XM_043237254.1 mRNA downstream 204919 24207655 ~ 24220008 (-) True LOC122342994
XM_043237483.1 mRNA downstream 495393 23816898 ~ 23929534 (-) False LOC122343128
XM_043237349.1 mRNA upstream 43595 24476996 ~ 24479914 (-) True ckap4
XM_043237444.1 mRNA upstream 51961 24485362 ~ 24492499 (-) True LOC122343108
XM_043237443.1 mRNA upstream 53033 24486434 ~ 24491446 (-) False LOC122343108
XM_043236131.1 mRNA upstream 108737 24542138 ~ 24544170 (-) True LOC122342346
XM_043237262.1 mRNA upstream 124731 24558132 ~ 24564000 (-) True LOC122342998
TU46025 other downstream 97695 24323970 ~ 24327232 (-) False LOC122342340
TU46026 other downstream 97695 24325784 ~ 24327232 (-) False LOC122342340
TU46027 other downstream 97695 24326795 ~ 24327232 (-) False LOC122342340
TU45934 other downstream 314254 24110224 ~ 24110673 (-) True G31091
TU45890 other downstream 653159 23745486 ~ 23771768 (-) True G31050
TU46123 other upstream 325599 24759000 ~ 24760786 (-) False LOC122342407
XR_006250852.1 other upstream 918588 25351989 ~ 25352153 (-) True LOC122343864
XR_006250869.1 other upstream 918998 25352399 ~ 25352587 (-) True LOC122343882
XR_006250841.1 other upstream 920520 25353921 ~ 25354084 (-) True LOC122343852
XR_006250860.1 other upstream 920936 25354337 ~ 25354527 (-) True LOC122343873