RNA id: TU46052



Basic Information


Item Value
RNA id TU46052
length 803
lncRNA type sense_over
GC content 0.42
exon number 2
gene id G31161
representative True

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 24513956 ~ 24552855 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


cacgTAACCAGCTAACAAAATCAGGACAGAAGCTTGAAGCAGAAAAGCAAGTGATTTAAACTCTCTCCGAGAAGATTGCATTGACAGACAGGAGGGGATCAGTTCAATGTAAAGACACTAATATGTTGTTATATGCGTTGAATCGCTGATGTGGGGTCTAATGGGAAATTCACTTTAGCTACACAAACACAGGTCATACttgacttttaaacaatttccaATAAAATCCCACTGTTTATTCGACATTTCCACACACATTAACAAATTCCTGCACTTTTCCAGCTAATCTCCTGCCTGTGGACAGAGGCTCTCTTGGCGGTTTGCGTTACAGCTCAGATGAAGATGCTTTTGATTCACACATCctcacagaaatataaacatCAGGCATTGAGAAAAGCTCGTGTCATTTCATGAAGTTAGCCTGCACCAGAACGCCCCTGGCGGTATATCACTATAATAGGTTTGCTTCCCAGTAAGTTCTTCTTGTAGTCTTTTAAGCTCTCCTCACAGTTCTGGCCGTAGTATGGTTcatcacactcacacattcCCAGGAACAGGTCTTTCACAGCAACGCACCTGCCTCTATTTTCATTCTCACCGCAGTCCAGGTTGGCGCAGGGATCTTCTGACATTATTTCTTCATcgcttttaatgaaaacaacaaacttgCCTATGTGACAATTCCCTTTATAAATGTAAGGAGTCTGAGCCGAAATGTCTTCAGGATATCTATTCATATCGTAGTCTGATATTTCCTGTGCGCCGTGGCTGTCATGAGCTTttatcatatatgtgtgtactgc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU45968 lncRNA downstream 11781 24298780 ~ 24502175 (-) False G31115
TU45967 lncRNA downstream 11781 24500852 ~ 24502175 (-) True G31115
TU46045 lncRNA downstream 47400 24465363 ~ 24466556 (-) True G31155
TU46046 lncRNA downstream 47400 24465363 ~ 24466556 (-) False G31155
TU46005 lncRNA downstream 49062 24453461 ~ 24464894 (-) True G31124
TU46065 lncRNA upstream 563 24553418 ~ 24683082 (-) True G31165
TU46063 lncRNA upstream 593 24553448 ~ 24683082 (-) False G31165
TU46084 lncRNA upstream 83406 24636261 ~ 24639737 (-) True G31179
TU46099 lncRNA upstream 114783 24667638 ~ 24669294 (-) True G31189
TU46102 lncRNA upstream 134673 24687528 ~ 24688132 (-) True G31192
XM_043237444.1 mRNA downstream 21457 24485362 ~ 24492499 (-) True LOC122343108
XM_043237443.1 mRNA downstream 22510 24486434 ~ 24491446 (-) False LOC122343108
XM_043237349.1 mRNA downstream 34042 24476996 ~ 24479914 (-) True ckap4
XM_043236128.1 mRNA downstream 186693 24325388 ~ 24327263 (-) True LOC122342340
XM_043236125.1 mRNA downstream 194844 24312842 ~ 24319112 (-) True LOC122342338
XM_043237262.1 mRNA upstream 5277 24558132 ~ 24564000 (-) True LOC122342998
XM_043237239.1 mRNA upstream 30112 24582967 ~ 24593953 (-) True LOC122342983
XM_043237376.1 mRNA upstream 74209 24627064 ~ 24631306 (-) False LOC122343065
XM_043237383.1 mRNA upstream 74209 24627064 ~ 24630716 (-) False LOC122343065
XM_043237377.1 mRNA upstream 74209 24627064 ~ 24630716 (-) True LOC122343065
TU46017 other downstream 16360 24304096 ~ 24497596 (-) True G31134
TU45989 other downstream 18778 24306501 ~ 24495178 (-) True G31120
TU46025 other downstream 186724 24323970 ~ 24327232 (-) False LOC122342340
TU46026 other downstream 186724 24325784 ~ 24327232 (-) False LOC122342340
TU46027 other downstream 186724 24326795 ~ 24327232 (-) False LOC122342340
TU46123 other upstream 206145 24759000 ~ 24760786 (-) False LOC122342407
XR_006250852.1 other upstream 799134 25351989 ~ 25352153 (-) True LOC122343864
XR_006250869.1 other upstream 799544 25352399 ~ 25352587 (-) True LOC122343882
XR_006250841.1 other upstream 801066 25353921 ~ 25354084 (-) True LOC122343852
XR_006250860.1 other upstream 801482 25354337 ~ 25354527 (-) True LOC122343873

Expression Profile