RNA id: TU46065


Basic Information

Item Value
RNA id TU46065
length 1315
lncRNA type read_through
GC content 0.44
exon number 2
gene id G31165
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 24553418 ~ 24683082 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGATTCTTTAACCACAGGTAACAGATACTGAAGAACTTCATCTCCTGTATGTTGTTCTCCAATAAACTGTTTTAGATCAAAAACATCCATCTTCTGCTCTGATGTCAGCAACACATAAACCAGAGCTGACCACTGAGAAGAGGAGAGTTTGACTTCTCTTATTCCTCCAGATTTCAGATAACCCTGGATCTCCtgcatcagtgaatcatcaCCCAGTTCAATCAGACAGtgaaacagattgatggatttcTCTGAAGAGTGATTCTCACTGATCTTCCTTTTGATGAACTGAACTGTTTCCTCTTTGTTGTAGGAgcagcttcctgtctgtgtcAGTAGTTTTCTTAAGAGAGTCTGATTGGACTCCACTGAGAGACCCAGAAGAAACCGCAAGAAAAGGTCTAGATGTCCATTCTTACTCTTTAGAGTCTCGTTCACAGCTCTCTGATGCAGCTCagataatgaattatatttattctggtaaaatatcttGGACAATAGACTGTGTTTGGTTTGGTTGAAAACATTTCTCTTCTTGTTTGTAAAAGAGAGATGCGCATATAGAGCTGCTAGATGTTCCTGAAGGCTCAGGTGAACGAAGCAGAAGACTTTCCCCTGAAACAAGCCCAgctcctctctgaagatctgagtgcacaGTCCTGAATAAACTGATGCTTCTGTCTCATCAATGCCACACTCTCTCAGGTCTTCATCATAGAAGATCAGGTTTCCTTTCACAAGCTGCTGGAAAGCCAGTTTCCCCAGTTTGAGGATCATGTCTTTATCAGTCACCTTCTTCTTATAGTCCttctcatgtttgatgttggtctgaaggatcaggaagtgtgtgtacatttgagtgagagTCTTGGGAATCTCTCCAGTCTCTGCTCGACTCAAGATCTTCTCAAGAACagtggctgagatccagcagaagactgggatgtgacacatgatgaaGAGGCTCCTGGAGGACTTCAGGTGTGAGATGATCCTGTCGGCCAGACTCTGATCACTGATCCTCTTCCTGAAGTATTCCTCCTTCTGTGTCTCATTGAAGCCTCGTACCTCTGTCACTCGATGGACGCACTCAGAGGGGACgagatcagctgctgctggtctggaggtgatccagatgagagcagagggaagcagattccccacaatcaggttcatcagcagcacatcCACTGAGGCTGACTCAGATATATTACACAGATTCACTTTACTCTTAAAGTCCAGAGACAGACGACACtcgtccagaccatcaaagatgaacaacacttCATATTCATCGctggatatttccatttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46052 lncRNA downstream 563 24513956 ~ 24552855 (-) True G31161
TU45970 lncRNA downstream 13079 24298780 ~ 24540339 (-) False G31115
TU45968 lncRNA downstream 51243 24298780 ~ 24502175 (-) False G31115
TU45967 lncRNA downstream 51243 24500852 ~ 24502175 (-) True G31115
TU46045 lncRNA downstream 86862 24465363 ~ 24466556 (-) True G31155
TU46102 lncRNA upstream 4446 24687528 ~ 24688132 (-) True G31192
TU46105 lncRNA upstream 14825 24697907 ~ 24710380 (-) True G31194
TU46110 lncRNA upstream 27702 24710784 ~ 24711425 (-) True G31199
TU46111 lncRNA upstream 28505 24711587 ~ 24711794 (-) True G31200
TU46112 lncRNA upstream 31370 24714452 ~ 24714777 (-) True G31201
XM_043236131.1 mRNA downstream 9248 24542138 ~ 24544170 (-) True LOC122342346
XM_043237444.1 mRNA downstream 60919 24485362 ~ 24492499 (-) True LOC122343108
XM_043237443.1 mRNA downstream 61972 24486434 ~ 24491446 (-) False LOC122343108
XM_043237349.1 mRNA downstream 73504 24476996 ~ 24479914 (-) True ckap4
XM_043236128.1 mRNA downstream 226155 24325388 ~ 24327263 (-) True LOC122342340
XM_043236177.1 mRNA upstream 70974 24754056 ~ 24759307 (-) True LOC122342407
XM_043236132.1 mRNA upstream 280892 24963974 ~ 24981623 (-) True LOC122342349
XM_043236134.1 mRNA upstream 349052 25032134 ~ 25034674 (-) True LOC122342351
XM_043236135.1 mRNA upstream 804106 25487188 ~ 25496806 (-) True LOC122342354
XM_043236417.1 mRNA upstream 871702 25554784 ~ 25567493 (-) False irf10
TU46017 other downstream 55822 24304096 ~ 24497596 (-) True G31134
TU45989 other downstream 58240 24306501 ~ 24495178 (-) True G31120
TU46025 other downstream 226186 24323970 ~ 24327232 (-) False LOC122342340
TU46026 other downstream 226186 24325784 ~ 24327232 (-) False LOC122342340
TU46027 other downstream 226186 24326795 ~ 24327232 (-) False LOC122342340
TU46123 other upstream 75918 24759000 ~ 24760786 (-) False LOC122342407
XR_006250852.1 other upstream 668907 25351989 ~ 25352153 (-) True LOC122343864
XR_006250869.1 other upstream 669317 25352399 ~ 25352587 (-) True LOC122343882
XR_006250841.1 other upstream 670839 25353921 ~ 25354084 (-) True LOC122343852
XR_006250860.1 other upstream 671255 25354337 ~ 25354527 (-) True LOC122343873

Expression Profile