RNA id: TU46084


Basic Information

Item Value
RNA id TU46084
length 1761
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G31179
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 24636261 ~ 24639737 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGTTACAGACGGGAAAATATAGATTTCCTGCATCATAAAGGATTCAGATTCATGGGATGAATGGTCCCTGACTCCTGGAGGGAACATCTGTCAGGTTACACCAAACATAAACGTCCTGATTTTAACGCGTTTGTAAGTCAAGAGAAAGACGTACTTACCGCTGAATGAAACGGGAAGTTGTGAGCTTTGGTTTACAGCGTGGAGAAACGAGAGGACCTGCTGGTTTTGGTTTTCTTGTGAAACCCTGAGTTGCGTCAGCGACTAGCGTAGACATCAGACACAGGAAGTTCATAGAAGGAGAAGAATACACTGACTTCTGAAATCAGCGTTTCATTCATCAGTAAACAGATGTTCACAATCCCGTGATATCAGCGCCGCTGAGGAAGGACTGTACAGGTTTTCTTCCACACAGACCTGTACTTGAGAGGAGATCTGACAGGGTGCAAAGTTAAAAAAGTCAGACTGATTGTAGCTGATCCCGATGTTATCCAATCCGTCGCTGAACGCCAGAGTCACGAGGAGCACAAGGAAAACCTCCGTTCTCATCCTGAAAACATACAAAGGACTCCTTGATCCGAGAGATAATCAACCACTTCTGTTACAATAAAGCTGTGAATTCATCCGCCATTACGTGAAGAAACCACCATGCTAAGCGTTCTGGTTTGGGTGAGCGAGTGCTGCAAGGAAGAAGAGTCTGcagtaattacacatttatatttttagaaattatggCTTGGATTTATCAAAAAGCTttgctttaaatgtattatattttggtTAGTCAATCATGGACCAAAAAAACACTGTACGCTTATGAAAGAACCTAAATCCTGAAAGCAAAATCAATGCAAAAAGAggttgaaaaatataaaatggtgTCTAACTCCCTGCATCTCTCAATTTGACAAAgtatttacaaagatatatgcAATTTAACAGCCAACAACTTACAATCAGAATCAGGGGCCTGTTTCAAAGGGGAAAGTCAGAATATGTTAAGTCCGGAGTGACGGAAGCACCTAGATCCTCGGACCTCTTAGCTCTTTACCTGGGAACGCTCTCCTGCAGGACCCCAATAAACCCCCGTAAACCCTTGACCAGCTCAGACCGGGCTTGGGGACCAGACCCAACCAGCCAAGCAGCCTAGGCTTATCTTTCAGCAGGGAAATGACCGATTTACCTCATCGTTGATCAGATTCAATACACCTTTAAAGCTATTATAACAGAATTGTGATTACCTGTTGACGTGTCGTGAGTTTCACTTCCCTTTTAAATACGGACTAGATTTTTGTGCTTGGTTCCTGCAAACAGTTTGCGTCGAGCATCAAACCTGATTTACGATAAAGTCCAATGAAAGCCAAATCTTATGATGTGTGATAATGTGATTTGAAGAAGCCTAAAGATACATTTAAGTAGATTAAACTGGCACATTGTACTCTAAGCAGACTTaccttggagatttcttgagcTTGTgcgaatgaaagagaaaaagggcTGAGACTGCTATTTGTCAGCTTGAAGGAAGGTGGGTGTGAACATGGCATGTCCTTCCTTCAAGCTAAATGAAGTTTAGCCCTTTTTAGGTACATGGTGTGTTTCGGTAACTAATTCATTCGTTTACCACCAGCTCTCTATGAAAAGTTTAAAAGCACAGACGGTTTGTAGGGGTTCTGTATGTAAAGAAACATAACTTTAGACATAAAAGAACTGTGAAAATTGACTGGTGTTTGTAGCAGTGCTCGAAACTTTGGTGAAGTCACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46052 lncRNA downstream 83406 24513956 ~ 24552855 (-) True G31161
TU45967 lncRNA downstream 134086 24500852 ~ 24502175 (-) True G31115
TU46045 lncRNA downstream 169705 24465363 ~ 24466556 (-) True G31155
TU46046 lncRNA downstream 169705 24465363 ~ 24466556 (-) False G31155
TU45999 lncRNA downstream 178002 24457414 ~ 24458259 (-) True G31121
TU46099 lncRNA upstream 27901 24667638 ~ 24669294 (-) True G31189
TU46102 lncRNA upstream 47791 24687528 ~ 24688132 (-) True G31192
TU46105 lncRNA upstream 58170 24697907 ~ 24710380 (-) True G31194
TU46110 lncRNA upstream 71047 24710784 ~ 24711425 (-) True G31199
TU46111 lncRNA upstream 71850 24711587 ~ 24711794 (-) True G31200
XM_043237376.1 mRNA downstream 4955 24627064 ~ 24631306 (-) False LOC122343065
XM_043237383.1 mRNA downstream 5545 24627064 ~ 24630716 (-) False LOC122343065
XM_043237377.1 mRNA downstream 5545 24627064 ~ 24630716 (-) True LOC122343065
XM_043237380.1 mRNA downstream 5545 24627064 ~ 24630716 (-) False LOC122343065
XM_043237379.1 mRNA downstream 5545 24627064 ~ 24630716 (-) False LOC122343065
XM_043236177.1 mRNA upstream 114319 24754056 ~ 24759307 (-) True LOC122342407
XM_043236132.1 mRNA upstream 324237 24963974 ~ 24981623 (-) True LOC122342349
XM_043236134.1 mRNA upstream 392397 25032134 ~ 25034674 (-) True LOC122342351
XM_043236135.1 mRNA upstream 847451 25487188 ~ 25496806 (-) True LOC122342354
XM_043236417.1 mRNA upstream 915047 25554784 ~ 25567493 (-) False irf10
TU46017 other downstream 138665 24304096 ~ 24497596 (-) True G31134
TU45989 other downstream 141083 24306501 ~ 24495178 (-) True G31120
TU46025 other downstream 309029 24323970 ~ 24327232 (-) False LOC122342340
TU46026 other downstream 309029 24325784 ~ 24327232 (-) False LOC122342340
TU46027 other downstream 309029 24326795 ~ 24327232 (-) False LOC122342340
TU46123 other upstream 119263 24759000 ~ 24760786 (-) False LOC122342407
XR_006250852.1 other upstream 712252 25351989 ~ 25352153 (-) True LOC122343864
XR_006250869.1 other upstream 712662 25352399 ~ 25352587 (-) True LOC122343882
XR_006250841.1 other upstream 714184 25353921 ~ 25354084 (-) True LOC122343852
XR_006250860.1 other upstream 714600 25354337 ~ 25354527 (-) True LOC122343873

Expression Profile