RNA id: XM_043236177.1


Basic Information

Item Value
RNA id XM_043236177.1
length 3952
RNA type mRNA
GC content 0.41
exon number 3
gene id LOC122342407
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 24754056 ~ 24760786 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACCACCACACAACTATTCAAAATCAAAAGCAGACATggacattgtgaaatattttacagtgtgaatcaatcttattttttgccatttaaagacCACACTCCCGAGAAGAGTTCACTATCATCTGTGGAAGCCTCACCTACCCAATCGCTGCCAACGCTCTCTGTTTCACCCCAAAGTTCATCGTCAAGCTCCTCTAGCAGCCCAGGACTTGACACACAGTGGGACGTCAACTTTGAAATTCCATGGAGTAAATTTCCTGAGGAAGTGATGCAGGCTTTAGAGAGGGGAAAAAGGCCTGGCCCAAAACTAAGGAGGCAAATGGATTGTTGTGACTGAGATGATGCAAAAATGCCCTCTTGTAGGTAAAAAGCATTCAACTGACGTTGCAACAAAAATGGTGGCAAAATATCGCAGTTCTCTCCAAGATGTAATAGAGGGTGATATTGTTGGAACAGGCTACCATTCCCTTGTCAAACAGTTGCAAAACAGAATTGAAAATGTGAGGCGCACTTCGACacccaaaataagaaaaagaaaacatcagaCCGATGACTCGGACCAAACAGACGAGATCCCATTAGAAGATAGAGCAGCAATGCAGGACACTTATGGGTGCATTAAATGGAATGTAAAATTTCTGCCCCTTGAAGAAACTCAAGAGAGCCAGCAGCAAAGATGGAAAAACTCAAGGTGATGTTCCAACACTCTGATGCCAATCCAGAGGaggtaaaatgtttaatgaagtCCACATTTTACACACAGCGTCAACATGTCAACCAGGGAAAAAGTATCAAATGCCTTAGAGAGGAGTGGCCGTTTTGGTTTGATGAACTTGGCATGTCAGTCCACTTTATGGAACTCACTGGGATTGACCTCAAAGAGACATTCACACGAAATTTGGATTTGAAAGGAAAAAGGCTTCTCGACTACTTGACCACAGTTTGTGTCAACAAGAGCAAGAAATTCCTTCAGAATTATGCAAGGCTTCAGAGGAAGCGGGGACTCCAGAGTGGCTGTTCAGATGACGTGATAGAGATGACCCTGCTTCTGCTCAGCTACTTTGATGAGAAGGAGGAGTCCATGTTCTTCCATGTAGAAGATACATGTCTGGCAGAAGAGGTCCAACTGGAGCAAGTGCCTCTGACACCCGTTGTTATTGTCTGTGGACAGTCCTGCTATTCCTCCACAAGGTACATGCTGAGTCTGGATCGGAACCTTATTAACACAAACATCTCCTCCTTCATTTCTGCACTGTGCCTCATGTTCGGGAGCTACtactgttttaatattcacTATCCATCTGAGCTGGCTTCAACTCTGGAGTTTCTTCAAAGGtgttttttctcaataaacCCAGAAAAAGGGTAGAATAAAAACTCCAAGCGTCGTCTCAATGTGAACCCTCGAGTCCTCACTCTGATACAGGAACTCTCTGATCACGAGTGGCGTTAAGCCAAAATATGGACTCTTTCTGTGGACTTGTGTTAAATTCACAAtgtgtattatgtttattaaagcactatataatttttttaacggttaaaatgagttttgtttgatatttccttgttaattgtatcatttattGATGCACAATAAGCaattattacatgtaaaaaatacaggaaataGTCAATTTTGCATAActgttgtatataaataaacaagttttttttgtagactTAAGTTTTTAATGTGATTCAGCTGTGATTTCATTCACTGTTAATCAATTTACATATTGTGTCAGTAAAGTTATCTACTgtgctgctgtattttttacagGAATTCTCTGGTAACCACAGCTGCCAGCGTTTTCCTGTAAAAACAACgggtgttttttatatatatagatggatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatattttattaggtttttagGCTTTGTTTAACTTAATGAGCTGCCGCTGATAAAAATGATGTGGACTACgctttgtattttgtgtgtatatatatgcatgtatattcatgtatacaCACAATACAAAGCGGGAAACGGCACTTTACGCCACGGATCTGGAGACGAGGGCTGTGGGCTAGCCAGGGAAGATTGGAGGGTGTGAACAAAGAACATTAACTCATTTCTTAATAGCTctcgatttttttttccccttccggTGTACGTGAGGAGAAACTTCGATTTCTCGCAGTCGCTAATTCGAGAGCTAGCGGCGCGGACGGTAATTTTGCGAGGAAGACGATGACGCCCCCCTCCCTCCACTCCTACCCCTTGACACGGCAGCCGTGTGAGCAGCCCCCGTCCGTAATCAATGCCAATGGCTGCAATTAATGCTGAGAAAAGTGAGCAGAACACAATCACTACTTCCTTCTTATTATTGTCAATTAGAGAGCGCTAATCAAGGCATGGGCAGCACACGCCGCTGCTCTCTCCAAACGAAATGTCAAACTTCATTACAGCCGAGAGCGTGAATCAAACTCCCTGCGCTCGCTGCCTCCTCCAGCTCCGCAGGGGAGACGTCTTCTCCGCCCCTAACCACGGCAGACTTCAGATAAGAGCCACGCCGCTCAGCTCAAACTAGCTCAGCCGCTGCACGCTAATCTATAGGCTAACCCGAATGTAGCCTATAACCAGTTCGTCACAATTTATCGCTATAGTTCCGATAATATGACAATTCGATGCATAAAATGACCAGcagatacatattttttaaaatctgcatagcaacatgctagcaACCGATCagaatgaatatgtaaataagcATTATTTACGTAATATGATCCCCAGAATAAGAAAATTACGTAGGAACTCCTTAGCAACACACTAACACCAAACCAGAACGAATGTGAATGAATATTCTATGAATGCACATGAGAAATCtacctagcaaccatccagaagACCCTAGCTACTACATAGCAATATATTAACTacttataagaaaaaaaattgtataatgaTTTTAAGCATACAATGATCAGCCAAGTAAGAAAAACTAGGGGTGCAACGGATTGTActccatttattttatgcagtaagaattattatattgttttccatttaattattacatttctgtatcTGAATACTATGGTTACTCTTTGATAGCCTACAATTTTATTTGTAGGCTGTTCATCTATGCTTGTAATTTGTGCACTAGTTCTTGTTGTATTACTGACTCTGGTAGTTAAGCTAGCATTCTGATctgaaaaaatatcttttgcaCCACTGCTAGTAACCACCATAACACCCTATCAATGGCATAGCAACCAACTAGAACAAATGTGTAGATGAATACTTAGCAGCCACCtggaacaccttagcaacacccaAACAAGTGCGTAGACGACTACCTAACAACAAtttagaacaccttagcaacacccaACCAACtatccagaacaccctagcaacatgCTAGCAACCAACCAGAACAAATGTGGCAACAACCTAAAACAACTTAGCATGTTGctttgcagttgctagggtCTACTGGGTGGTTGCTTGAATGTTGCTATCAACCAAtctaaacaaatacagaaattatGATTGTATGCTTACAATGATGATCAATGGAGTAAGGCAACTATGTAGCagccacccagaacaccttagcaacagcCGAGCAACCATCCATAACAGTAACTGCTTAGCAACATGACAGAAACTAATCCGAATAAATGTGGAATGCTACCTAACTACCTAACAACcaccagaacaccctagcaacaccctgatAACCACCccgaacaccctagcaacaccttggTAACCACGCTGAACGTCCTAACAACTGCATTTTccgaaaatgtaaaaacctgtTCTTTGGTAAAACCGTACAAAGTAAAACACTAGTGAAGTACACAACATAATTAAGATACGTTTGATACATGCAGAGAATACaatttcaaaacacacacacacacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46112 lncRNA downstream 39279 24714452 ~ 24714777 (-) True G31201
TU46111 lncRNA downstream 42262 24711587 ~ 24711794 (-) True G31200
TU46110 lncRNA downstream 42631 24710784 ~ 24711425 (-) True G31199
TU46105 lncRNA downstream 43676 24697907 ~ 24710380 (-) True G31194
TU46102 lncRNA downstream 65924 24687528 ~ 24688132 (-) True G31192
TU46132 lncRNA upstream 223019 24982326 ~ 24982689 (-) True G31221
TU46133 lncRNA upstream 223781 24983088 ~ 24983329 (-) True G31222
TU46136 lncRNA upstream 422706 25182013 ~ 25182344 (-) True G31225
TU46140 lncRNA upstream 555883 25315190 ~ 25315569 (-) True G31229
TU46148 lncRNA upstream 589067 25348374 ~ 25348645 (-) True G31237
XM_043237376.1 mRNA downstream 122750 24627064 ~ 24631306 (-) False LOC122343065
XM_043237383.1 mRNA downstream 123340 24627064 ~ 24630716 (-) False LOC122343065
XM_043237377.1 mRNA downstream 123340 24627064 ~ 24630716 (-) True LOC122343065
XM_043237380.1 mRNA downstream 123340 24627064 ~ 24630716 (-) False LOC122343065
XM_043237379.1 mRNA downstream 123340 24627064 ~ 24630716 (-) False LOC122343065
XM_043236132.1 mRNA upstream 204667 24963974 ~ 24981623 (-) True LOC122342349
XM_043236134.1 mRNA upstream 272827 25032134 ~ 25034674 (-) True LOC122342351
XM_043236135.1 mRNA upstream 727881 25487188 ~ 25496806 (-) True LOC122342354
XM_043236417.1 mRNA upstream 795477 25554784 ~ 25567493 (-) False irf10
XM_043236416.1 mRNA upstream 795477 25554784 ~ 25567493 (-) True irf10
TU46017 other downstream 256460 24304096 ~ 24497596 (-) True G31134
TU45989 other downstream 258878 24306501 ~ 24495178 (-) True G31120
TU46025 other downstream 426824 24323970 ~ 24327232 (-) False LOC122342340
TU46026 other downstream 426824 24325784 ~ 24327232 (-) False LOC122342340
TU46027 other downstream 426824 24326795 ~ 24327232 (-) False LOC122342340
XR_006250852.1 other upstream 592682 25351989 ~ 25352153 (-) True LOC122343864
XR_006250869.1 other upstream 593092 25352399 ~ 25352587 (-) True LOC122343882
XR_006250841.1 other upstream 594614 25353921 ~ 25354084 (-) True LOC122343852
XR_006250860.1 other upstream 595030 25354337 ~ 25354527 (-) True LOC122343873
XR_006250856.1 other upstream 596621 25355928 ~ 25356088 (-) True LOC122343868

Expression Profile