RNA id: TU46140


Basic Information

Item Value
RNA id TU46140
length 380
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G31229
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 25315190 ~ 25315569 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ccccacatataataatctagaacacagcctatcacttgatggctgctctgttaattcttcatcatcagttaggaacctaggtgtgctgtttgaccgcaatctttcctttgaaaatcatgtttctagcatctgtaaaactgcgtttttccatcttaaaaatatatctaaattacgacctatgctttcgacctctaatgcagaaatattaattcatgcgtttatgacctcaaggttagattattgcaatgctttattgggtggttgttctgcacgcttaataaacaaacttcagctagtccaaaacacagcagctagagtccttactagaactaggaagtatgatcatattagcccggttctgtcaacactgcactggctcc

Function

GO:

id name namespace
GO:0016503 pheromone receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46136 lncRNA downstream 132846 25182013 ~ 25182344 (-) True G31225
TU46133 lncRNA downstream 331861 24983088 ~ 24983329 (-) True G31222
TU46132 lncRNA downstream 332501 24982326 ~ 24982689 (-) True G31221
TU46112 lncRNA downstream 600413 24714452 ~ 24714777 (-) True G31201
TU46111 lncRNA downstream 603396 24711587 ~ 24711794 (-) True G31200
TU46148 lncRNA upstream 32805 25348374 ~ 25348645 (-) True G31237
TU46172 lncRNA upstream 120537 25436106 ~ 25437120 (-) True G31250
TU46175 lncRNA upstream 147584 25463153 ~ 25463544 (-) True G31253
TU46281 lncRNA upstream 319379 25634948 ~ 25635148 (-) True G31335
TU46297 lncRNA upstream 381861 25697430 ~ 25697757 (-) True G31351
XM_043236134.1 mRNA downstream 280516 25032134 ~ 25034674 (-) True LOC122342351
XM_043236132.1 mRNA downstream 333567 24963974 ~ 24981623 (-) True LOC122342349
XM_043236177.1 mRNA downstream 555883 24754056 ~ 24759307 (-) True LOC122342407
XM_043237384.1 mRNA downstream 684556 24627064 ~ 24630634 (-) False LOC122343065
XM_043236135.1 mRNA upstream 171619 25487188 ~ 25496806 (-) True LOC122342354
XM_043236417.1 mRNA upstream 239215 25554784 ~ 25567493 (-) False irf10
XM_043236416.1 mRNA upstream 239215 25554784 ~ 25567493 (-) True irf10
XM_043236421.1 mRNA upstream 295046 25610615 ~ 25625124 (-) True samhd1
XM_043236423.1 mRNA upstream 311038 25626607 ~ 25629375 (-) True mtg2
TU46123 other downstream 554404 24759000 ~ 24760786 (-) False LOC122342407
TU45989 other downstream 820012 24306501 ~ 24495178 (-) True G31120
XR_006250852.1 other upstream 36420 25351989 ~ 25352153 (-) True LOC122343864
XR_006250869.1 other upstream 36830 25352399 ~ 25352587 (-) True LOC122343882
XR_006250841.1 other upstream 38352 25353921 ~ 25354084 (-) True LOC122343852
XR_006250860.1 other upstream 38768 25354337 ~ 25354527 (-) True LOC122343873
XR_006250856.1 other upstream 40359 25355928 ~ 25356088 (-) True LOC122343868

Expression Profile