RNA id: XM_043236865.1


Basic Information

Item Value
RNA id XM_043236865.1
length 3257
RNA type mRNA
GC content 0.45
exon number 11
gene id LOC122342771
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 25635042 ~ 25688230 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATTATCGAGAAATATTTCCTCGATGAACTATAACGAGTGCAAGTGTTCGATGTAATGTTTGAGGCAAACGCGGAACGAAAGACATTTGCCACTGGTACGGTTTATCCGCTCGGGTCAAAGTTCAAACAGGTTCGGCGCGAGCTGCTAGAGCAGACGTGCCCGCGCTGCGGTACCAAACTCGCTCATTCGATGAGCTGCGGCGCGCGCCTTACGAGTCTCGCGAACGCGCGAGGTCCTGTGTGACGCGCTTGAGTTCAGCGAGGGAACAGAACCAGAGAGACACTGGCGACTTCAGACGGTGTCGTCGACAACACTTTACTACCGTAACTGCTCGTGGTACTGAGTCACGTGTATTAAATATTGAACGCGGACTAATGGAATaattacagtatgttttaaCCTATagcgttttgtgtgtgtatgagagataatgtttattttacaattaggatgatacaataaaagtaaacattacGTTTTGTTACTTAATGAAATTGTGCTCAAAACAGTGTTCTTGTGccacatttaattcaatacgaattaaaatgtaacactgCTGAAAGTCTCTGACGAAAAACAAGgattttattatagtaaaagtaCAGCGTAGTAGTCTATACAGATCTAGAGCTCGAGACAGAGTTTACTAATACTACATGGTTAAACTAGTGCAGGTAACGCCGTGGTTGTGTGTCGGAAGAGCTGAAGGACATTGTCCGGCTGGTCACCTCATTTCCGGTCACTAATTTGACCGAGCGGCGGCAGAAACGACGCCACATTTCTCTGTCGTGTAATGACAGAAGAGCCGCTTCCCTTTGTTCACGCACATCACCCCGTGTCTTTGTCCGTGGTTTGCGTGGGAGAATGACGCATTCTGTTGGTGAATCCAGAGCCGCGCTACGGAGCGCTCCGGCCCAATAGAGTTCACCAGATTATACCAAGAGAGACGGGAGGAGGTCAGGCGCTCGCCCGAACACCGCAGCTAGTTATGAATGAGCGCAAAAAAAGCGCCTCGAGCTGCCAGTACCGACATTAAACACCCTTTTCCGCTTTACAGCAGCCGGTTATCTTAATGCTTCGTTTCTAGCGAAACTGTCATACTTCGACGCCGACGCTCCCCTATGCTTCCTCGGCAATCCTCGCCCGGAGTGTGTTCGCGCCCCATCGCGGCATAATATACACAGATAAAAcgttaattataattaaacactGGAAGATGTCCGTTCCGTTTTCAGCCGTGCGTCCTCGGACGAAAGGAGAGGTCACGCAGCAGACCATACAGAAGATGCTGGATGAAAACCATCATCTGATACAGTGCATTATGGACTATCAGAGCAAAGGGAAAACATCTGAATGTACACAGTATCAGCAGATATTGCACAGAAACTTGGTCTACCTAGCAACAATAGCAGACTCTAATCAGAATATGCAGTCTCTGTTACCAGCGCCTCCCAACCCCAATCTAAACATAGGACCAGGTGGCGGAGGTCAGTCTCTGCACGCTCAGGCTAATATGAATGATAATATGGCCACTGGCTTGCCACCCACCTCACTAATGCAGAGCCAAATGAGCAATGGCCCCAGCCACGGCTTCACCCAGCAGCAGCCCAGCACATCCATGAGCCTGCCTGCCAGCAGTCATGGCACGGGGCCTGGGTACAGCCACTCGGCACACACCTCTCAGGGTCAGGTGGCCTATTCATCCATGGCCTCTCGTGCCAACCTCAACATGCAGTCCAGCCAAGTTTCTATGATGCATCAGCAAGGCATTGGACCCCATTACTCATCCACCTCAGCAGGGGGTCAGCACTACCAGGGCCAGCAGACGGGAATAATGGCACAGGGAAACCAGGGGAACAGCATAATGTCACAAAGACCAATGGGAAATTATCGTGTCCCACAACAAGGATCAGCCCCGCAGTACATGGGCCAGGAGGAGTTCTACGGAGAGCAGTATGGACACACTCAGAGCTCCAGCGAGCCTGTTAGCCAACACTATTACTCAGATGGTCATGGGGAGTATTCCTATCAGCAGTCTTCCTATGGGGAGCAGAATTATGAGAGATCCTTTGATGAGTCGTCACAAATCTATTATGAAGGAGGAAACGCTCAGTACAGCCAGCAGCAGAACCAGTACCAGCAGGGCTCCGGGACGCACCAGACCTACGGCTACGGCGCTCAGCCTCCGGGATACGGTGGCGGACATGCTCAGTATCAGCAGGGTCAGAATCAGCAGTACCCATCATACCGCTCCATACAGCCGTCACAGAGGTCCTACTCTTTTGAACAGGGTCAGTATGGAAACTATCAGCAATAAAGAGACGTGGCTTTTTTGTGTACATCCCTCTTTACGCTGGACGCTGGGAAAACCGAGGATTCTCCACCAGCCCTGTCTCACAGGCTTGCTACGGTATCGAAATCAAACTCTATATACACGGAAACAAATTCGATTTTTTTACAAGGGTCtggagtttattttttaaaactacttttatcaTACAGgatatattattttctatacCAGCACACTGAAGTCTCGGacacttttgcttttttcttgtttgcttgttttgcaTTATAAGTTTTGTCAGTTGTCTGAATGGATTTATGTTTTGATAGCACAAATAGATGTTCTtggcatttatttcaaatttaaatactgtaatcaTACATCTTAATCGAAGAGAAGGCCAAATTACAGACAAATAGCCAAAGTTCAAATTTTACACATATAATAAGTTGTATATAGGTTTCTTTATTGTAATGCACACTCATATAGTACGATGTTCTTCAACAGCGGTGTGATGTTGTTCTCATCATGTTTTAGGAGACTGAATGTTTAAGATATAGACATGTTCATGCCTTACTGTTGCTCTTACACTGTATACTGTatcatatgaacaaaaaaaaagcatttgtaaagGGGGTTAAAGATGGATCCACCCGTAAGGGGACAGCATACTTCAAAACTGTGGAAAATGGACATTACAGATAATTATCACTGGCTGTTAAACAGCTTTTATACCATATTGCACAAATAATCTGTGACAATCGCGGGATACGTGTGTTTACTTAGCAAACTGTATGGTTTACCTGTCATTTGAGTATGTATATGTAGTATATACACTTATGTGAAAACATTAGCAGTTAGCAAAATTGTGAAGACATTCGTGATCATTTGAACAAATCTTCATCTTCGCTGTTTTGTAATATATGggcttttattaaactgataaacatgacaaatcaaaaacaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46139 lncRNA upstream 319498 25315179 ~ 25315553 (+) True G31228
TU46137 lncRNA upstream 320455 25314223 ~ 25314596 (+) True G31226
TU46134 lncRNA upstream 645777 24988867 ~ 24989274 (+) True G31223
TU45676 lncRNA upstream 920053 24714697 ~ 24714998 (+) True G30877
TU45666 lncRNA upstream 961457 24672967 ~ 24673594 (+) False LOC122343086
TU46335 lncRNA downstream 101508 25787380 ~ 25787901 (+) True G31380
TU46346 lncRNA downstream 131159 25817031 ~ 25817455 (+) False G31388
TU46343 lncRNA downstream 131199 25817071 ~ 25817564 (+) True G31388
TU46344 lncRNA downstream 131199 25817071 ~ 25817455 (+) False G31388
XR_006250606.1 lncRNA downstream 230517 25916389 ~ 25917199 (+) True LOC122342592
XM_043236244.1 mRNA upstream 243 25631361 ~ 25634808 (+) True lsm14b
XM_043236418.1 mRNA upstream 25206 25573077 ~ 25609845 (+) True l1camb
XM_043236419.1 mRNA upstream 25206 25573077 ~ 25609845 (+) False l1camb
XM_043236420.1 mRNA upstream 25206 25573077 ~ 25609845 (+) False l1camb
XM_043236399.1 mRNA upstream 81218 25547654 ~ 25553833 (+) False zmp:0000000926
XM_043237791.1 mRNA downstream 17959 25703831 ~ 25709637 (+) True ogfr
XM_043237792.1 mRNA downstream 18090 25703962 ~ 25709637 (+) False ogfr
XM_043236264.1 mRNA downstream 25790 25711662 ~ 25728651 (+) True col9a3
XM_043236137.1 mRNA downstream 289005 25974877 ~ 25977623 (+) True LOC122342357
XM_043236141.1 mRNA downstream 487322 26173194 ~ 26177618 (+) True LOC122342360
XR_006250558.1 other upstream 867499 24743848 ~ 24767552 (+) False LOC122342408
TU45681 other upstream 906604 24721424 ~ 24728447 (+) True G30882
TU45653 other upstream 988480 24640129 ~ 24646571 (+) True LOC122343125
TU45649 other upstream 996397 24636364 ~ 24638654 (+) False LOC122343159
XR_006250668.1 other upstream 1164184 24465454 ~ 24470867 (+) False LOC122343023
TU46238 other downstream 7930 25693802 ~ 25695381 (+) True G31298
TU46339 other downstream 126759 25812631 ~ 25813625 (+) True G31384
unassigned_transcript_386 other downstream 139239 25825111 ~ 25825192 (+) True trnas-uga
unassigned_transcript_387 other downstream 140752 25826624 ~ 25826696 (+) True trnak-uuu_1
unassigned_transcript_388 other downstream 141289 25827161 ~ 25827242 (+) True trnas-uga_1

Expression Profile