RNA id: XR_006250648.1


Basic Information

Item Value
RNA id XR_006250648.1
length 2329
RNA type transcript
GC content 0.50
exon number 10
gene id LOC122342771
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 25635042 ~ 25688230 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCGATGATGATTATCGAGAAATATTTCCTCGATGAACTATAACGAGTGCAAGTGTTCGATGTAATGTTTGAGGCAAACGCGGAACGAAAGACATTTGCCACTGGTACGGTTTATCCGCTCGGGTCAAAGTTCAAACAGGTTCGGCGCGAGCTGCTAGAGCAGACGTGCCCGCGCTGCGGTACCAAACTCGCTCATTCGATGAGCTGCGGCGCGCGCCTTACGAGTCTCGCGAACGCGCGAGGTCCTGTGTGACGCGCTTGAGTTCAGCGAGGGAACAGAACCAGAGAGACACTGGCGACTTCAGACGGTGTCGTCGACAACACTTTACTACCGTAACTGCTCGTGGTACTGAGTCACGTGTATTAAATATTGAACGCGGACTAATGGAATaattacagtatgttttaaCCTATagcgttttgtgtgtgtatgagagataatgtttattttacaattaggatgatacaataaaagtaaacattacGTTTTGTTACTTAATGAAATTGTGCTCAAAACAGTGTTCTTGTGccacatttaattcaatacgaattaaaatgtaacactgCTGAAAGTCTCTGACGAAAAACAAGgattttattatagtaaaagtaCAGCGTAGTAGTCTATACAGATCTAGAGCTCGAGACAGAGTTTACTAATACTACATGGTTAAACTAGTGCAGGTAACGCCGTGGTTGTGTGTCGGAAGAGCTGAAGGACATTGTCCGGCTGGTCACCTCATTTCCGGTCACTAATTTGACCGAGCGGCGGCAGAAACGACGCCACATTTCTCTGTCGTGTAATGACAGAAGAGCCGCTTCCCTTTGTTCACGCACATCACCCCGTGTCTTTGTCCGTGGTTTGCGTGGGAGAATGACGCATTCTGTTGGTGAATCCAGAGCCGCGCTACGGAGCGCTCCGGCCCAATAGAGTTCACCAGATTATACCAAGAGAGACGGGAGGAGGTCAGGCGCTCGCCCGAACACCGCAGCTAGTTATGAATGAGCGCAAAAAAAGCGCCTCGAGCTGCCAGTACCGACATTAAACACCCTTTTCCGCTTTACAGCAGCCGGTTATCTTAATGCTTCGTTTCTAGCGAAACTGTCATACTTCGACGCCGACGCTCCCCTATGCTTCCTCGGCAATCCTCGCCCGGAGTGTGTTCGCGCCCCATCGCGGCATAATATACACAGATAAAAcgttaattataattaaacactGGAAGATGTCCGTTCCGTTTTCAGCCGTGCGTCCTCGGACGAAAGGAGAGGTCACGCAGCAGACCATACAGAAGATGCTGGATGAAAACCATCATCTGATACAGTGCATTATGGACTATCAGAGCAAAGGGAAAACATCTGAATGTACACAGTATCAGCAGATATTGCACAGAAACTTGGTCTACCTAGCAACAATAGCAGACTCTAATCAGAATATGCAGTCTCTGTTACCAGCGCCTCCCAACCCCAATCTAAACATAGGACCAGGTGGCGGAGGTCAGTCTCTGCACGCTCAGGCTAATATGAATGATAATATGGCCACTGGCTTGCCACCCACCTCACTAATGCAGAGCCAAATGAGCAATGGCCCCAGCCACGGCTTCACCCAGCAGCAGCCCAGCACATCCATGAGCCTGCCTGCCAGCAGTCATGGCACGGGGCCTGGGTACAGCCACTCGGCACACACCTCTCAGGGTCAGGTGGCCTATTCATCCATGGCCTCTCGTGCCAACCTCAACATGCAGTCCAGCCAAGTTTCTATGATGCATCAGCAAGGCATTGGACCCCATTACTCATCCACCTCAGCAGGGGGTCAGCACTACCAGGGCCAGCAGACGGGAATAATGGCACAGGGAAACCAGGGGAACAGCATAATGTCACAAAGACCAATGGGAAATTATCGTGTCCCACAACAAGGATCAGCCCCGCAGTACATGGGCCAGGAGGAGTTCTACGGAGAGCAGTATGGACACACTCAGAGCTCCAGCGAGCCTGTTAGCCAACACTATTACTCAGATGGTCATGGGGAGTATTCCTATCAGCAGTCTTCCTATGGGGAGCAGAATTATGAGAGATCCTTTGATGAGTCGTCACAAATCTATTATGAAGGAGgTTTTTACCTCTTGTACACCACCATGTCCAAGTGATCTGAGGGCGCACGTGCTTCTGCTGCATGACGTGAGAAGATCTGATGGTTTTACACAGCTGGTTGAGGTCTTTAATGGTCATCCCATGTGCAGCTCCAAGGAAACGCTCAGTACAGCCAGCAGCAGAACCAGTACCAGCAGGGCTCCGGGACGCACCAGACCTACGGCTACGGCGCTCAGCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46139 lncRNA upstream 319489 25315179 ~ 25315553 (+) True G31228
TU46137 lncRNA upstream 320446 25314223 ~ 25314596 (+) True G31226
TU46134 lncRNA upstream 645768 24988867 ~ 24989274 (+) True G31223
TU45676 lncRNA upstream 920044 24714697 ~ 24714998 (+) True G30877
TU45666 lncRNA upstream 961448 24672967 ~ 24673594 (+) False LOC122343086
TU46335 lncRNA downstream 102760 25787380 ~ 25787901 (+) True G31380
TU46346 lncRNA downstream 132411 25817031 ~ 25817455 (+) False G31388
TU46343 lncRNA downstream 132451 25817071 ~ 25817564 (+) True G31388
TU46344 lncRNA downstream 132451 25817071 ~ 25817455 (+) False G31388
XR_006250606.1 lncRNA downstream 231769 25916389 ~ 25917199 (+) True LOC122342592
XM_043236244.1 mRNA upstream 234 25631361 ~ 25634808 (+) True lsm14b
XM_043236418.1 mRNA upstream 25197 25573077 ~ 25609845 (+) True l1camb
XM_043236419.1 mRNA upstream 25197 25573077 ~ 25609845 (+) False l1camb
XM_043236420.1 mRNA upstream 25197 25573077 ~ 25609845 (+) False l1camb
XM_043236409.1 mRNA upstream 81209 25517396 ~ 25553833 (+) False zmp:0000000926
XM_043237791.1 mRNA downstream 19211 25703831 ~ 25709637 (+) True ogfr
XM_043237792.1 mRNA downstream 19342 25703962 ~ 25709637 (+) False ogfr
XM_043236264.1 mRNA downstream 27042 25711662 ~ 25728651 (+) True col9a3
XM_043236137.1 mRNA downstream 290257 25974877 ~ 25977623 (+) True LOC122342357
XM_043236141.1 mRNA downstream 488574 26173194 ~ 26177618 (+) True LOC122342360
XR_006250558.1 other upstream 867490 24743848 ~ 24767552 (+) False LOC122342408
TU45681 other upstream 906595 24721424 ~ 24728447 (+) True G30882
TU45653 other upstream 988471 24640129 ~ 24646571 (+) True LOC122343125
TU45649 other upstream 996388 24636364 ~ 24638654 (+) False LOC122343159
XR_006250668.1 other upstream 1164175 24465454 ~ 24470867 (+) False LOC122343023
TU46238 other downstream 9182 25693802 ~ 25695381 (+) True G31298
TU46339 other downstream 128011 25812631 ~ 25813625 (+) True G31384
unassigned_transcript_386 other downstream 140491 25825111 ~ 25825192 (+) True trnas-uga
unassigned_transcript_387 other downstream 142004 25826624 ~ 25826696 (+) True trnak-uuu_1
unassigned_transcript_388 other downstream 142541 25827161 ~ 25827242 (+) True trnas-uga_1

Expression Profile