RNA id: TU46238


Basic Information

Item Value
RNA id TU46238
length 1580
RNA type TUCP
GC content 0.43
exon number 1
gene id G31298
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 25693802 ~ 25695381 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAACTGTGCAACCCAGTGTTATAAAATCACTTGTAACTGTTAACTGTAATTGAAGCCATTtgttttctgataaaaaaagagagaaaacctTGTGCCATTATTGACTACATTTGGGAAAATGGCCTATATTGTTTTTTCAAAGgattaatcatgattttaaGCTCACAGcacttgaaataaatgcattctgaCAGTAAATAAGTTGAATGaactcaaaatgtaaaattgtaagTAATGTTTAGTCAACTTGATTACTTGATTGTTTAAGTAAAGACAACAATGTATCATATCCCATCAAGATTTGGTTGTATTGCAATAAATTGGAGTCACCTTACAGTCATTGCAGATAGTCTACCTTAGAAGTGTAGGCCTACTTCTTACTTTAGGGACAGGCCTTAGGTAGTTATGCATAACTTCATGTTGTAACGTGTAACAAGAAGGCTGAAAAATGAAGCGTCAACGGTATTTGGAAGTTTGTAGATTATGACGTGTCATGCCACTGAAGCTCACCTATTGTGGTGATGACAGTAATCGCAAAGTAGAAGGATCCGGCGAATTTCCACTGTCTGCCGGCGCGGTGGGGCTCCGCCTGCAGCACCACTCGCTCGATCTCTCGGTAGTCGTCCTCGCTGAAGCGGTACTTTCTCTTCATGTCGCTGCGCCTCTGCTCCAGCATGCGCTTCCGAGCGCTCTCCGTCTCAGACTCCAGCGCGTCGAAGACCGCGGCGCCCACCAGCAGATAAGAGAACATGCAGAGGATGAGCGACAGCGTGCGCACGTTCtgcttcttcatcttcatcttcagagCGGCTCTAACAGGTTGCACGACTCAGTGCATCGCTATTAGCGCTCTGTCTATTTACCAAACGCTGAGGTGTCGTTTTAGGCGCATAGTCTGTCGCGTTCGTGTCTTCGAGTCCTTTCTTGGCGAATAAGGTGTGTGTCGTAGAGATCAAACAAACTAAGCTCTCCTGTTTTAAAGCGGTCTTCCTGGTCTGCGCAAATCGTGCGAAGGAGGTTTCCAAATCGAACCTGTCATGACTGGCAACCAATAAAATGTTGTGTAGCCCAGCAGCATTCAGAGTCAGTCAGTCAGAAGACTGTGCGTGGAGCGCTGTCCGCGGTGCTGAAACCCGTGTGTCATCCACACGAACTGTTTATCGTCAACACTCATTTAAATACTGAGCAAAACAAGCTAACTAACAcaattactaataattaaaacagcagaCCTGCACATGCATACTGTTAAATAAACCGCCTcaaaatagtgttaaagtaGCACTGATCCAGAACTGAAGATAATGAAGTGATTAAGTACATGTTGATGTGTATTAGTgatgaacacctgctgttaACAATCACTGAAGCCACGGCCTTAGATAAAATCCAGCTTCACTCATTACTCAGCAGTTATTTGTGTCAGATGCTACACTACAGAAgcttttattgatgttttatcAGAGGATTAAATGTTCGATGCCGCCATCATCAGGTCAGGGTTTACTTCAGCTTGACTTTGAGTAGTTGCTTCTGTGATGAACTGTGTCTGCTAACAAGTCTTTAACATATTTAGGATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46232 lncRNA upstream 7817 25680141 ~ 25685985 (+) True LOC122342771
TU46139 lncRNA upstream 378249 25315179 ~ 25315553 (+) True G31228
TU46137 lncRNA upstream 379206 25314223 ~ 25314596 (+) True G31226
TU46134 lncRNA upstream 704528 24988867 ~ 24989274 (+) True G31223
TU45676 lncRNA upstream 978804 24714697 ~ 24714998 (+) True G30877
TU46335 lncRNA downstream 91999 25787380 ~ 25787901 (+) True G31380
TU46346 lncRNA downstream 121650 25817031 ~ 25817455 (+) False G31388
TU46343 lncRNA downstream 121690 25817071 ~ 25817564 (+) True G31388
TU46344 lncRNA downstream 121690 25817071 ~ 25817455 (+) False G31388
XR_006250606.1 lncRNA downstream 221008 25916389 ~ 25917199 (+) True LOC122342592
XM_043236866.1 mRNA upstream 7930 25635042 ~ 25685872 (+) False LOC122342771
XM_043236868.1 mRNA upstream 7930 25635044 ~ 25685872 (+) False LOC122342771
XM_043236863.1 mRNA upstream 7930 25635045 ~ 25685872 (+) False LOC122342771
XM_043236870.1 mRNA upstream 7930 25635045 ~ 25685872 (+) False LOC122342771
XM_043236867.1 mRNA upstream 7930 25635047 ~ 25685872 (+) False LOC122342771
XM_043237791.1 mRNA downstream 8450 25703831 ~ 25709637 (+) True ogfr
XM_043237792.1 mRNA downstream 8581 25703962 ~ 25709637 (+) False ogfr
XM_043236264.1 mRNA downstream 16281 25711662 ~ 25728651 (+) True col9a3
XM_043236137.1 mRNA downstream 279496 25974877 ~ 25977623 (+) True LOC122342357
XM_043236141.1 mRNA downstream 477813 26173194 ~ 26177618 (+) True LOC122342360
XR_006250647.1 other upstream 5572 25635045 ~ 25688230 (+) False LOC122342771
XR_006250648.1 other upstream 9182 25635042 ~ 25684620 (+) False LOC122342771
XR_006250558.1 other upstream 926250 24743848 ~ 24767552 (+) False LOC122342408
TU45681 other upstream 965355 24721424 ~ 24728447 (+) True G30882
TU45653 other upstream 1047231 24640129 ~ 24646571 (+) True LOC122343125
TU46339 other downstream 117250 25812631 ~ 25813625 (+) True G31384
unassigned_transcript_386 other downstream 129730 25825111 ~ 25825192 (+) True trnas-uga
unassigned_transcript_387 other downstream 131243 25826624 ~ 25826696 (+) True trnak-uuu_1
unassigned_transcript_388 other downstream 131780 25827161 ~ 25827242 (+) True trnas-uga_1
unassigned_transcript_389 other downstream 131971 25827352 ~ 25827424 (+) True trnak-uuu_2

Expression Profile