RNA id: TU46281


Basic Information

Item Value
RNA id TU46281
length 201
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G31335
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 25634948 ~ 25635148 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTACCAGTGGCAAATGTCTTTCGTTCCGCGTTTGCCTCAAACATTACATCGAACACTTGCACTCGTTATAGTTCATCGAGGAAATATTTCTCGATAATCATCATCGATTTACAGCCTAGGCCTATTATCCATGTCCTTATttctccacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggac

Function

GO:

id name namespace
GO:0004175 endopeptidase activity molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function
GO:0017171 serine hydrolase activity molecular_function

KEGG:

id description
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46175 lncRNA downstream 171404 25463153 ~ 25463544 (-) True G31253
TU46172 lncRNA downstream 197828 25436106 ~ 25437120 (-) True G31250
TU46148 lncRNA downstream 286303 25348374 ~ 25348645 (-) True G31237
TU46140 lncRNA downstream 319379 25315190 ~ 25315569 (-) True G31229
TU46136 lncRNA downstream 452604 25182013 ~ 25182344 (-) True G31225
TU46297 lncRNA upstream 62282 25697430 ~ 25697757 (-) True G31351
TU46298 lncRNA upstream 67122 25702270 ~ 25703067 (-) True G31352
TU46336 lncRNA upstream 152232 25787380 ~ 25787875 (-) True G31381
TU46340 lncRNA upstream 177492 25812640 ~ 25813615 (-) True G31385
TU46342 lncRNA upstream 178756 25813904 ~ 25815225 (-) True G31387
XM_043236423.1 mRNA downstream 5573 25626607 ~ 25629375 (-) True mtg2
XM_043236421.1 mRNA downstream 9824 25610615 ~ 25625124 (-) True samhd1
XM_043236417.1 mRNA downstream 67455 25554784 ~ 25567493 (-) False irf10
XM_043236416.1 mRNA downstream 67455 25554784 ~ 25567493 (-) True irf10
XM_043236135.1 mRNA downstream 138142 25487188 ~ 25496806 (-) True LOC122342354
XM_043236862.1 mRNA upstream 51429 25686577 ~ 25695667 (-) True kcnk15
XM_043236266.1 mRNA upstream 92946 25728094 ~ 25741253 (-) False LOC122342461
XM_043236267.1 mRNA upstream 92946 25728094 ~ 25740913 (-) True LOC122342461
XM_043236861.1 mRNA upstream 106448 25741596 ~ 25761605 (-) True si:ch73-181d5.4
XM_043237668.1 mRNA upstream 127384 25762532 ~ 25778521 (-) True hm13
TU46256 other downstream 73750 25559040 ~ 25561198 (-) True G31314
XR_006250868.1 other downstream 248131 25386628 ~ 25386817 (-) True LOC122343881
XR_006250847.1 other downstream 248574 25386213 ~ 25386374 (-) True LOC122343859
XR_006250865.1 other downstream 250102 25384655 ~ 25384846 (-) True LOC122343878
XR_006250858.1 other downstream 250543 25384248 ~ 25384405 (-) True LOC122343871
unassigned_transcript_476 other upstream 346318 25981466 ~ 25981546 (-) True trnas-uga_31
unassigned_transcript_477 other upstream 349686 25984834 ~ 25984906 (-) True trnak-uuu_27
unassigned_transcript_478 other upstream 350817 25985965 ~ 25986045 (-) True trnas-uga_32
unassigned_transcript_479 other upstream 351157 25986305 ~ 25986386 (-) True trnas-aga_31
unassigned_transcript_480 other upstream 353462 25988610 ~ 25988691 (-) True trnas-uga_33

Expression Profile