RNA id: TU46297



Basic Information


Item Value
RNA id TU46297
length 328
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G31351
representative True

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 25697430 ~ 25697757 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GATGCTTCTCTTAATCATAATTTATTCCAAACCATTGTCCTGGAGGTTGTAAGCTCTAAtgtaaaaagcatttgattGCACTGAGTggattatgtgttttttttctttctgtaaattgcttcacaattatttaaatcactGTATTTCGAAAATATTTCAAGTGAAAGTTGATTCCTGCCCTACTACTTAGCTAAGATTGGATTGGTCTGGATTTTCATCCAGACAGAGAGATGTAATTGTGAACTTTACTTGTTTTGAGGTCCAACAAGCCTCTGGTTATTTCACAGTGACTTGTAgacattatgtattttttgaagCTGAGGTTGTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU46281 lncRNA downstream 62282 25634948 ~ 25635148 (-) True G31335
TU46175 lncRNA downstream 233886 25463153 ~ 25463544 (-) True G31253
TU46172 lncRNA downstream 260310 25436106 ~ 25437120 (-) True G31250
TU46148 lncRNA downstream 348785 25348374 ~ 25348645 (-) True G31237
TU46140 lncRNA downstream 381861 25315190 ~ 25315569 (-) True G31229
TU46298 lncRNA upstream 4513 25702270 ~ 25703067 (-) True G31352
TU46336 lncRNA upstream 89623 25787380 ~ 25787875 (-) True G31381
TU46340 lncRNA upstream 114883 25812640 ~ 25813615 (-) True G31385
TU46342 lncRNA upstream 116147 25813904 ~ 25815225 (-) True G31387
TU46348 lncRNA upstream 217940 25915697 ~ 25915957 (-) True G31390
XM_043236862.1 mRNA downstream 1763 25686577 ~ 25695667 (-) True kcnk15
XM_043236423.1 mRNA downstream 68055 25626607 ~ 25629375 (-) True mtg2
XM_043236421.1 mRNA downstream 72306 25610615 ~ 25625124 (-) True samhd1
XM_043236417.1 mRNA downstream 129937 25554784 ~ 25567493 (-) False irf10
XM_043236416.1 mRNA downstream 129937 25554784 ~ 25567493 (-) True irf10
XM_043236266.1 mRNA upstream 30337 25728094 ~ 25741253 (-) False LOC122342461
XM_043236267.1 mRNA upstream 30337 25728094 ~ 25740913 (-) True LOC122342461
XM_043236861.1 mRNA upstream 43839 25741596 ~ 25761605 (-) True si:ch73-181d5.4
XM_043237668.1 mRNA upstream 64775 25762532 ~ 25778521 (-) True hm13
XM_043237669.1 mRNA upstream 64775 25762532 ~ 25778519 (-) False hm13
TU46256 other downstream 136232 25559040 ~ 25561198 (-) True G31314
XR_006250868.1 other downstream 310613 25386628 ~ 25386817 (-) True LOC122343881
XR_006250847.1 other downstream 311056 25386213 ~ 25386374 (-) True LOC122343859
XR_006250865.1 other downstream 312584 25384655 ~ 25384846 (-) True LOC122343878
XR_006250858.1 other downstream 313025 25384248 ~ 25384405 (-) True LOC122343871
unassigned_transcript_476 other upstream 283709 25981466 ~ 25981546 (-) True trnas-uga_31
unassigned_transcript_477 other upstream 287077 25984834 ~ 25984906 (-) True trnak-uuu_27
unassigned_transcript_478 other upstream 288208 25985965 ~ 25986045 (-) True trnas-uga_32
unassigned_transcript_479 other upstream 288548 25986305 ~ 25986386 (-) True trnas-aga_31
unassigned_transcript_480 other upstream 290853 25988610 ~ 25988691 (-) True trnas-uga_33

Expression Profile