RNA id: TU46335



Basic Information


Item Value
RNA id TU46335
length 522
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G31380
representative True

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 25787380 ~ 25787901 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


agattactagctgctttggaagcacagtaatctcgacagacgaattctgtcgaccaatagtctgggacattggtttgtcgacaaaAAGTTCTTCTAAGCgcgcagggtatgaatggtatgaatgtgttgtatgaaagtcattgtgaatcactaggatttacggtgaataaggtggttgttgtggtttaggaataacacaacTGATATTTCTCCCTACTAGGAAGGGAGTTgtgttattcaaacataaaaattatattgggtttgagtcaaaattgaaaagttggtttgttcagacggctgtatccgcagacaaattagtgtctgtagaagtttggtgcagtggacgatctgatcagacgtgtgactaatcgttgactcttaccaaaaagcaaatatgggcgcaggaaaaagtaaattgacgggagatccaaagtttatgcatacatattcggcagacagtgtgcgatatctcaatgagtggaataaaaaatatgatttcagtggtaaattagtcaaaaggga

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU46232 lncRNA upstream 101395 25680141 ~ 25685985 (+) True LOC122342771
TU46139 lncRNA upstream 471827 25315179 ~ 25315553 (+) True G31228
TU46137 lncRNA upstream 472784 25314223 ~ 25314596 (+) True G31226
TU46134 lncRNA upstream 798106 24988867 ~ 24989274 (+) True G31223
TU45676 lncRNA upstream 1072382 24714697 ~ 24714998 (+) True G30877
TU46346 lncRNA downstream 29130 25817031 ~ 25817455 (+) False G31388
TU46343 lncRNA downstream 29170 25817071 ~ 25817564 (+) True G31388
TU46344 lncRNA downstream 29170 25817071 ~ 25817455 (+) False G31388
XR_006250606.1 lncRNA downstream 128488 25916389 ~ 25917199 (+) True LOC122342592
XR_006250570.1 lncRNA downstream 373590 26161491 ~ 26163397 (+) True LOC122342452
XM_043236264.1 mRNA upstream 58729 25711662 ~ 25728651 (+) True col9a3
XM_043237791.1 mRNA upstream 77743 25703831 ~ 25709637 (+) True ogfr
XM_043237792.1 mRNA upstream 77743 25703962 ~ 25709637 (+) False ogfr
XM_043236866.1 mRNA upstream 101508 25635042 ~ 25685872 (+) False LOC122342771
XM_043236868.1 mRNA upstream 101508 25635044 ~ 25685872 (+) False LOC122342771
XM_043236137.1 mRNA downstream 186976 25974877 ~ 25977623 (+) True LOC122342357
XM_043236141.1 mRNA downstream 385293 26173194 ~ 26177618 (+) True LOC122342360
XM_043236142.1 mRNA downstream 595015 26382916 ~ 26427239 (+) True LOC122342362
XM_043236145.1 mRNA downstream 977052 26764953 ~ 26767173 (+) True LOC122342366
XM_043236148.1 mRNA downstream 1216800 27004701 ~ 27006306 (+) True LOC122342369
TU46238 other upstream 91999 25693802 ~ 25695381 (+) True G31298
XR_006250647.1 other upstream 99150 25635045 ~ 25688230 (+) False LOC122342771
XR_006250648.1 other upstream 102760 25635042 ~ 25684620 (+) False LOC122342771
XR_006250558.1 other upstream 1019828 24743848 ~ 24767552 (+) False LOC122342408
TU45681 other upstream 1058933 24721424 ~ 24728447 (+) True G30882
TU46339 other downstream 24730 25812631 ~ 25813625 (+) True G31384
unassigned_transcript_386 other downstream 37210 25825111 ~ 25825192 (+) True trnas-uga
unassigned_transcript_387 other downstream 38723 25826624 ~ 25826696 (+) True trnak-uuu_1
unassigned_transcript_388 other downstream 39260 25827161 ~ 25827242 (+) True trnas-uga_1
unassigned_transcript_389 other downstream 39451 25827352 ~ 25827424 (+) True trnak-uuu_2

Expression Profile