RNA id: TU46357


Basic Information

Item Value
RNA id TU46357
length 319
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G31399
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 26237920 ~ 26238238 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttgctcctgtctgctgagaggttggtttgtttgtagctgcgtgtagcttcgcttttcaatttatcacctcttctctaacgatcaaatataatttaactgtgtacatatcgttgatactattaaattaatctaactaattagactgctgttagttcgttcgctttaatctaaaactcggcggtgagttagtactcgttagccgattcactttcgctcccacccgcgttttcgcgccgattgtgggcttttttcccccgctcctgttcatttgttcctcgcgctcgttcgctccattttcacaagctcatcaaaacaagag

Function

GO:

id name namespace
GO:0009078 pyruvate family amino acid metabolic process biological_process
GO:0009080 pyruvate family amino acid catabolic process biological_process
GO:1901606 alpha-amino acid catabolic process biological_process
GO:0042851 L-alanine metabolic process biological_process
GO:0042853 L-alanine catabolic process biological_process
GO:0006522 alanine metabolic process biological_process
GO:0006524 alanine catabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250568.1 lncRNA downstream 216536 26020548 ~ 26021384 (-) True LOC122342449
XR_006250768.1 lncRNA downstream 318510 25918811 ~ 25919410 (-) True LOC122343400
TU46348 lncRNA downstream 321963 25915697 ~ 25915957 (-) True G31390
TU46342 lncRNA downstream 422695 25813904 ~ 25815225 (-) True G31387
TU46340 lncRNA downstream 424305 25812640 ~ 25813615 (-) True G31385
XR_006250605.1 lncRNA upstream 65424 26303662 ~ 26304672 (-) True LOC122342589
TU46360 lncRNA upstream 189914 26428152 ~ 26433786 (-) True G31402
TU46371 lncRNA upstream 240478 26478716 ~ 26478933 (-) True G31413
XR_006250546.1 lncRNA upstream 450375 26688613 ~ 26689452 (-) True LOC122342214
XR_006250601.1 lncRNA upstream 493422 26731660 ~ 26732626 (-) True LOC122342580
XM_043236140.1 mRNA downstream 211813 26023937 ~ 26026107 (-) True LOC122342359
XM_043236138.1 mRNA downstream 214676 26022144 ~ 26023244 (-) True LOC122342358
XM_043236136.1 mRNA downstream 282299 25952760 ~ 25955621 (-) True LOC122342356
XM_043237668.1 mRNA downstream 459399 25762532 ~ 25778521 (-) True hm13
XM_043237669.1 mRNA downstream 459401 25762532 ~ 25778519 (-) False hm13
XM_043236143.1 mRNA upstream 451746 26689984 ~ 26691677 (-) True LOC122342363
XM_043236144.1 mRNA upstream 454383 26692621 ~ 26693546 (-) True LOC122342364
XM_043236146.1 mRNA upstream 627535 26865773 ~ 26869148 (-) True LOC122342367
XM_043236245.1 mRNA upstream 1145515 27383753 ~ 27389398 (-) True LOC122342454
XM_043238050.1 mRNA upstream 1170850 27409088 ~ 27415650 (-) True flot1a
unassigned_transcript_663 other downstream 7112 26230722 ~ 26230808 (-) True trnay-gua_7
unassigned_transcript_661 other downstream 7980 26229868 ~ 26229940 (-) True trnar-acg_4
unassigned_transcript_660 other downstream 8534 26229300 ~ 26229386 (-) True trnay-gua_6
unassigned_transcript_658 other downstream 9402 26228446 ~ 26228518 (-) True trnar-acg_3
unassigned_transcript_657 other downstream 9755 26228094 ~ 26228165 (-) True trnae-uuc_3
unassigned_transcript_665 other upstream 482 26238720 ~ 26238806 (-) True trnay-gua_8
unassigned_transcript_666 other upstream 692 26238930 ~ 26239001 (-) True trnae-uuc_4
unassigned_transcript_667 other upstream 1042 26239280 ~ 26239352 (-) True trnar-acg_5
unassigned_transcript_669 other upstream 2099 26240337 ~ 26240407 (-) True trnae-uuc_5
unassigned_transcript_670 other upstream 5298 26243536 ~ 26243624 (-) True trnan-guu

Expression Profile