RNA id: TU46384


Basic Information

Item Value
RNA id TU46384
length 294
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G31424
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 26901712 ~ 26902005 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

atggcatctacgctaatattagtcctgtttctttctcaatctgttttcacagtttgtatccagactagatggtggatcagcacccagagattatgttcatcagagaccagaaaacctagatgcgcccgtcgacagatcaccagatcctgatgcacacacacacacacacacactaagtcatttacactacctgacacagctgcgtttaaaattgaactggaggttaagtgctgggcgtccggtcagaggagaactgaccccaactgagtctggtttctcccaaggttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46382 lncRNA upstream 33241 26868192 ~ 26868471 (+) True G31422
TU46380 lncRNA upstream 122106 26779293 ~ 26779606 (+) True G31420
XR_006250760.1 lncRNA upstream 131892 26768931 ~ 26769820 (+) True LOC122343359
TU46370 lncRNA upstream 422779 26478716 ~ 26478933 (+) True G31412
TU46362 lncRNA upstream 457721 26443506 ~ 26443991 (+) True G31404
XR_006250602.1 lncRNA downstream 31335 26933340 ~ 26934351 (+) True LOC122342584
TU46387 lncRNA downstream 91029 26993034 ~ 26993354 (+) True G31427
TU46388 lncRNA downstream 182312 27084317 ~ 27084707 (+) True G31428
TU46389 lncRNA downstream 295882 27197887 ~ 27198266 (+) True G31429
TU46401 lncRNA downstream 331091 27233096 ~ 27233432 (+) True G31438
XM_043236145.1 mRNA upstream 134539 26764953 ~ 26767173 (+) True LOC122342366
XM_043236142.1 mRNA upstream 474473 26382916 ~ 26427239 (+) True LOC122342362
XM_043236141.1 mRNA upstream 724094 26173194 ~ 26177618 (+) True LOC122342360
XM_043236137.1 mRNA upstream 924089 25974877 ~ 25977623 (+) True LOC122342357
XM_043236264.1 mRNA upstream 1173061 25711662 ~ 25728651 (+) True col9a3
XM_043236148.1 mRNA downstream 102696 27004701 ~ 27006306 (+) True LOC122342369
XM_043236149.1 mRNA downstream 305731 27207736 ~ 27210602 (+) True LOC122342370
XM_043236327.1 mRNA downstream 454807 27356812 ~ 27358163 (+) True LOC122342494
XM_043236150.1 mRNA downstream 462013 27364018 ~ 27371196 (+) True LOC122342372
XM_043236921.1 mRNA downstream 488334 27390339 ~ 27406088 (+) True LOC122342806
unassigned_transcript_825 other upstream 254755 26646885 ~ 26646957 (+) True trnav-aac_2
unassigned_transcript_824 other upstream 256755 26644885 ~ 26644957 (+) True trnav-cac
unassigned_transcript_823 other upstream 257508 26644132 ~ 26644204 (+) True trnav-aac_1
unassigned_transcript_822 other upstream 258577 26643063 ~ 26643135 (+) True trnav-aac
unassigned_transcript_793 other upstream 357965 26543675 ~ 26543747 (+) True trnak-uuu_85
unassigned_transcript_860 other downstream 28547 26930552 ~ 26930638 (+) True trnay-gua_25
unassigned_transcript_863 other downstream 51006 26953011 ~ 26953084 (+) True trnar-acg_23
unassigned_transcript_864 other downstream 51555 26953560 ~ 26953646 (+) True trnay-gua_26
unassigned_transcript_866 other downstream 56491 26958496 ~ 26958568 (+) True trnar-acg_24
unassigned_transcript_867 other downstream 56845 26958850 ~ 26958920 (+) True trnae-uuc_19

Expression Profile