RNA id: TU46404


Basic Information

Item Value
RNA id TU46404
length 393
lncRNA type read_through
GC content 0.52
exon number 3
gene id LOC122342372
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 27297536 ~ 27371196 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

agaaaaagagGCACTTAATGGGCAGCAGAGcgaaagcaaagaaaaagagacggaggaaaaggaagaaaaagaggaggaagaggaggaggaagatgaagaagaggatGATTCCTCTGATCCTGACATTGAAGAGGAGATCCAAGCCAGTCAAAAACAAGCTGGTCCGGATGACGATGAAGAGGATGTGGAAGAGGAGCCGTTGAACAACAGTGACAATGACCAGCCGATGGATGAGAACTCTCCTCCCTCGATCAAATCATCCGCCCAGGACACGGAGGAGGACCAGGGAGATGAAGACCAGCGCTCTCCGGCCAGCAGCACACACGAGACGGAAACTAACACGAACCACGTGGCCGTGGAGCAAAGCCCTCCGTTCATACAGACCTCAGATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46401 lncRNA upstream 64104 27233096 ~ 27233432 (+) True G31438
TU46389 lncRNA upstream 99270 27197887 ~ 27198266 (+) True G31429
TU46388 lncRNA upstream 212829 27084317 ~ 27084707 (+) True G31428
TU46387 lncRNA upstream 304182 26993034 ~ 26993354 (+) True G31427
XR_006250602.1 lncRNA upstream 363185 26933340 ~ 26934351 (+) True LOC122342584
TU46427 lncRNA downstream 38779 27407961 ~ 27410595 (+) True G31443
XR_006250747.1 lncRNA downstream 238605 27607787 ~ 27619661 (+) True LOC122343300
XR_006250749.1 lncRNA downstream 238605 27607787 ~ 27616858 (+) False LOC122343300
XR_006250748.1 lncRNA downstream 238605 27607787 ~ 27616858 (+) False LOC122343300
XR_006250746.1 lncRNA downstream 238605 27607787 ~ 27616858 (+) False LOC122343300
XM_043236149.1 mRNA upstream 86934 27207736 ~ 27210602 (+) True LOC122342370
XM_043236148.1 mRNA upstream 291230 27004701 ~ 27006306 (+) True LOC122342369
XM_043236145.1 mRNA upstream 530363 26764953 ~ 26767173 (+) True LOC122342366
XM_043236142.1 mRNA upstream 870297 26382916 ~ 26427239 (+) True LOC122342362
XM_043236141.1 mRNA upstream 1119918 26173194 ~ 26177618 (+) True LOC122342360
XM_043236921.1 mRNA downstream 21157 27390339 ~ 27406088 (+) True LOC122342806
XM_043236927.1 mRNA downstream 21157 27390339 ~ 27406088 (+) False LOC122342806
XM_043236924.1 mRNA downstream 21157 27390339 ~ 27406088 (+) False LOC122342806
XM_043236923.1 mRNA downstream 21157 27390339 ~ 27406088 (+) False LOC122342806
XM_043236925.1 mRNA downstream 21157 27390339 ~ 27406088 (+) False LOC122342806
unassigned_transcript_953 other upstream 73550 27223914 ~ 27223986 (+) True trnav-uac_5
unassigned_transcript_952 other upstream 155912 27141552 ~ 27141624 (+) True trnav-aac_9
unassigned_transcript_951 other upstream 158410 27139054 ~ 27139126 (+) True trnav-cac_2
unassigned_transcript_950 other upstream 159628 27137836 ~ 27137908 (+) True trnav-aac_8
unassigned_transcript_949 other upstream 160510 27136954 ~ 27137026 (+) True trnav-aac_7
TU46683 other downstream 837776 28206958 ~ 28216248 (+) True G31614
TU46688 other downstream 849551 28218733 ~ 28221417 (+) True G31619
TU46717 other downstream 915845 28285027 ~ 28320694 (+) False G31636
TU46718 other downstream 915845 28285027 ~ 28320694 (+) True G31636
TU46723 other downstream 930845 28300027 ~ 28301346 (+) False LOC122342379

Expression Profile