RNA id: XM_043236924.1


Basic Information

Item Value
RNA id XM_043236924.1
length 4316
RNA type mRNA
GC content 0.45
exon number 11
gene id LOC122342806
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 27360843 ~ 27406088 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTCgcgagagaaaaaaatagaaaaaaattgagggaaaaaaatcgGTGAATCCAAGGGGTTCGGGCGGATTTGGACGAAGTTTCCGAACTGTCCCGGCCCGGAGGAGCCCTGGGGGTTGAAAGGGAATCGCCAGCACCGAAATAATGGAAGATTCCCATTTCAACTCATCATACTTTTGGTCTCCCGTTCCAACAGTGCAAGGACAGATTGAGAACGCCATGTTTCTGAATAAGATGAAAGAGCAGCTGGGGCCGGACAAGGGAGCTGGTTTTCCGCACTCGTCCGCGGCGCACTACCCCACGGCGGTGCTGACGGTGCCGGGCTCGGTCGCCATGGACACGGGAGCCGTCGGGAGGGTGCCCAAGCAggagggtggaggaggaggagcgaGCGGGACGGCAGGGCCGCAGATATCCGGCGTGGGAGCGCACCTGCATCCTCCTCACACGTCCCAGAACATCACGGTGGTGCCTGTCCCGTCCACCGGCATCATGACAGCAGCAGGGTTAGTGATCACGACTCCTCAAGGGGCGCTGGTCACTCCTCCTTCCTCCTCGCAGTCTTTTGTTTCTGGACCTCCCACAACGACCATGATCGTGTCCGCTTTACACCCAACTAACACAGATAAGAAAGAGGACGGAAGTATCCCACCCGCTGTAGTCATGCCACTTCCCTCAAAGCGGGGCAGAAAGAAGAAGTCCATGATGCCAAGGGCAGGTCCCGTTTCAGCCCATGCGCTCGCCACAGGAAGTGATGCGCTGATTCTTGCACACCTGGCCACTGGGGGACAGCACAACACGAGTGACCCGTATGACCTTTCCAATGACGAGGATGATCATCCAGGCAAAGATGGGAACAAGTCATACAGGTGCCGCATGTGCGCGGTGACGTTCTTCAACAAGTCAGACATGCAGATTCACGCCAAGTCGCACACGGAGGCCAAGCCGCACAAGTGTCCTCACTGCTCCAAGTCCTTCGCCAACTCCAGCTATCTGGCGCAGCACATCCGCATCCACAGCGGCGCCAAACCCTACACCTGCTCCTACTGCCAGAAAACCTTCAGACAGCTCAGTCATCTACAGCAGCATACACGAAACCACACAGAGGGCAAACCGCACAAGTGTCCTCACTGCTCCAAATCGTTCGCCAACTCCAGCTACCTGTCCCAGCACATCCGCATCCACAGCGGCGCCAAACCCTACACCTGCTCCTACTGCCAGAAAACCTTCAGGCAGCTCAGTCACTTACAGCAGCATAACAGgaTTCATACTGGCGATCGGCCGTATAAGTGTTCCCATCCTGGCTGTGAGAAAGCTTTTACCCAACTATCTAACCTCCAGtctcATCGAAGACAGCACAACAAGGACAAGCCATACAAATGTCACAACTGCAATCGCGGCTACACAGATGCGACCAGCTTAGAGGTTCACTTGTCTACACATACGGTGAAACACGCCAAACTCTTCTCCTGTGGCCTCTGCAACCGCGCGTACACATCTGAGACGTACCTGATGAAACACATGCGAAAACACAACCCAGACCCTCTGACGGTAGCAGCGGCGGTAGCTGCCCAACAAGCCCAGCAGGGCCAGAACCCGGCTCAGGCCTCGGGTGCGGGAGGAGGCAGGGGTCGTGGGAGAGGCAGGGGGGCCGCTTCAGCCGGGGCGGCAGCGCAAGCCCAGAACCAGCCCAACCCCAACCCACCTACCAGTTACTCTGTTACCGAGGGAATACCCTGCCCTTTCGACCTGCACCAGTACAAGACCGTTTCGGCTGGAGAGATCCAGTACAAACCGGTCACCGTGGCCGACCTGGCGGCCCACAAAGACCTCTGCCTCACCGTCTCCACCTCTGCCATCCAGGTGGAGCACATGAACTCGtagaggagctggaggagaacGAGAGCGAGGAGGTGGCGGGAGGAGAACGGACTATAGATTGCATAGGAAATAAAACACTGCCTTGGGACAGAAGAGGATTTCCAAATACAGACTGGCAGGACGGGACGGCAAGTTTGCTAATTGAGGAGAAAAGGAGAGATGAAGGAGGAGCACATGAACTCTTTCTTATGAGCTGTCTTTCTTTAGGCTTGCTCTGCAGTGTCACAAAAAAGGACTTGAGCTTTCATGGTGGATATTTTCAGTTAGCAGCTATTCAAATGTACGATTCCCAGCCCTAATTCTGTCCCTTCGGCCaatagatatattatatatatatattgcaaaagtCGGGCTacggaagtaaaaaaaaatcccattcattttctccatagggGAATTGATTTTTGATCATTATTAACAAACAATTGAAGATAGCTGTGAGGctgttaaagggacagttcatccaaaattaaaaccaaaaccaaagataataatttgaagaatgttaaaataatagcatTGTTCCTTTCAAAGAAACTACATTACTACTGATTCTGAAAAGAGGTCTTAACCAATCTGGGAAGATCACCAAATGCATAAACTCTTAAGGATGCAGTTATTAAATACGTTTTTGCTTCAAATCGGTTTCCAATGTCACGGTCCACCATGTAGCTGGTTGGTTTGGTTCGTTGGCTAAAAACTCTTCAACAAAGACTTCCTTAAAATCCACatggaaaacatttaattgGAAAAATTCTTTGAGCCAAGACCAAAAAGTGGGCAAAaaccacttttaaaaaatacattttacacgTCGGTCTGAAATGTTCCCTCAGAATCATGATCGACTTCTTAACTTTACCCATAAATACATCACCCTCGGTCTTGAGAACATAACGTCCAGGTCATTTTATTCAGAATCATCGTTTTTGACTTTGAGGgcataatgaataaaattaaaagtattcgatttgcaaattatatttttcgattaattaattattatcgAATTAATTATTCGATtttagactgaaaaaaaaaatgaagtgctcATTGGAGAAGTGATCATTGAGCAAAGAATTTTACCTTAGTGTTATTTTTTCCTCCAATGGCACATTTCTCTATCGCTACTAAAAGGTAcgtgaaatgaaaacaaagtttaattatactataaactataaaaggACACAAGCTTTATAAATGGGTGATTAAAGTTACCAGTGTCCGCTAAAAAAAGACTAGCACAAGCTTTAAAAACCAGCAAGTTTACTTTTTCTCTAAGGTTACAAATGCTGGTAAACAAGAAAATACGGACAAATACCACCAAAGTATCTGAAGCAACTAGTTTACATCAGTATTTCACAGAAATACAGGCCTGCCTGCGGCATTGGAGCAGGTTCACAGTCATGTTCTTCCAGGTCAGGGAGACTTTGTAAGGTGTTTTGGAGTTTGAAGGGCTTTTATGACACTGCTTTGCAGGCCTGCGGATTGACTTTGCAGCTGGTTTGTCACTAGCAGCCGAGAACCTGCTGGAAAGAGGTGGCGAAGACTGCACTAAAGGGGAGAAGGATAAACAGAAGCTAACGGTTTATGGGGAGATGGCacttaaatgaacttttttattcattgtttctgttttgtcattacattttagccatttatcatatgtatttttctattgtccttgtgtgtgtatgtttgagcGTGCGAAGGGTTGGTTGAAAGAGCAtgtaagaaaacatttaaagaaggAGATGAATGTGAAAACATCTATAaaactcattttgttttgtttttaagctgAAGAGTTTagtcattttctattttcttgaCCCAcaaagagtcttttttttttttttccagaaaggAATGGAGAGGGAAAATGTGCAGACAACAGTTTGGTTACCAGGTACTATttagtagtgtttttttaaaaacctttaataccagttattatattaactttgttttttttttttgcaattattactatcatcatcatcatcattatccaTTGGGAgttactctgtgtgtgtatatatagagatGACATGTTCATTCAAAAAGGGAAGGATTGTCTTTCTGGTCCAgctgaaatatgatttttaaaaaatgtattaaaggcATCATTAGAGATCAGAGTATGGGATGTTAACATATTGCTAAACCATCCGATCGCTGACCTACATGATGCCATCTGTGTCCAGCAAGCAGCCAAGTGATTGGCTGATCCTCCATGTATAATCCTTGTTGTATCCATATATGTCTTTGGAAAATAACACGGTtctcaatattattattaatgttacttCTGTCACTCCTAATACTTATTAACTACTCTTTAAGATGACTTTGCTGTATAGATCAACACTCATTCATCTTGACGTAACTGTTTCTCCtaatatgaacaataaaaaatgataaacacaTTGTAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46404 lncRNA upstream 21157 27297536 ~ 27369182 (+) False LOC122342372
TU46401 lncRNA upstream 156907 27233096 ~ 27233432 (+) True G31438
TU46389 lncRNA upstream 192073 27197887 ~ 27198266 (+) True G31429
TU46388 lncRNA upstream 305632 27084317 ~ 27084707 (+) True G31428
TU46387 lncRNA upstream 396985 26993034 ~ 26993354 (+) True G31427
TU46427 lncRNA downstream 1873 27407961 ~ 27410595 (+) True G31443
XR_006250747.1 lncRNA downstream 201699 27607787 ~ 27619661 (+) True LOC122343300
XR_006250749.1 lncRNA downstream 201699 27607787 ~ 27616858 (+) False LOC122343300
XR_006250748.1 lncRNA downstream 201699 27607787 ~ 27616858 (+) False LOC122343300
XR_006250746.1 lncRNA downstream 201699 27607787 ~ 27616858 (+) False LOC122343300
XM_043236150.1 mRNA upstream 19143 27364018 ~ 27371196 (+) True LOC122342372
XM_043236327.1 mRNA upstream 32176 27356812 ~ 27358163 (+) True LOC122342494
XM_043236149.1 mRNA upstream 179737 27207736 ~ 27210602 (+) True LOC122342370
XM_043236148.1 mRNA upstream 384033 27004701 ~ 27006306 (+) True LOC122342369
XM_043236145.1 mRNA upstream 623166 26764953 ~ 26767173 (+) True LOC122342366
XM_043237110.1 mRNA downstream 13455 27419543 ~ 27436028 (+) True LOC122342913
XM_043237111.1 mRNA downstream 30345 27436433 ~ 27442200 (+) True tcf19l
XM_043237687.1 mRNA downstream 54393 27460481 ~ 27543243 (+) False pvrl2l
XM_043237688.1 mRNA downstream 54427 27460515 ~ 27599258 (+) True pvrl2l
XM_043237686.1 mRNA downstream 216584 27622672 ~ 27649545 (+) True atp1a3a
TU46402 other upstream 22349 27366230 ~ 27367990 (+) False LOC122342372
TU46403 other upstream 22349 27366351 ~ 27367990 (+) False LOC122342372
TU46406 other upstream 32192 27357443 ~ 27358147 (+) False LOC122342494
unassigned_transcript_953 other upstream 166353 27223914 ~ 27223986 (+) True trnav-uac_5
unassigned_transcript_952 other upstream 248715 27141552 ~ 27141624 (+) True trnav-aac_9
TU46683 other downstream 800870 28206958 ~ 28216248 (+) True G31614
TU46688 other downstream 812645 28218733 ~ 28221417 (+) True G31619
TU46717 other downstream 878939 28285027 ~ 28320694 (+) False G31636
TU46718 other downstream 878939 28285027 ~ 28320694 (+) True G31636
TU46723 other downstream 893939 28300027 ~ 28301346 (+) False LOC122342379

Expression Profile