RNA id: XR_006250747.1


Basic Information

Item Value
RNA id XR_006250747.1
length 1985
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id LOC122343300
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 27607787 ~ 27619661 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATTAACTTCTACGGAAGTGAGCTCAATCCCCGCAACGCTTCGTTCTCGAGTAATTTATTCGTATTTCGCAGGCCTTGTCCGGGAACCCGCCGTCAAGCGACGGCTTCGGCTTGCAGCAGCAGCACCTTCGATAAGCCATCTCCATGGAAACAGCCCAGCAACAGGCTGGCCCCTCATGGCCAATGAGAGCGTGAGGTGTCCCGGATTCTCCTCCAATGGTGGCGGTGGGCTGCTGAGCTCAAGacGCAGTAGAGGAAGCGTTCCAGACAAAATGAGTGGAGGGGAGGAAGAAGAGCGAGAAGAGGTGCTTAGCAAGAAAGAGAAGAGGAGTAACCAAAAAACAGCTTGAAGCGACATTTCTTCTCTGATTACGTGTTCACCGGTGCAAGGGCAAGACAATAACCTCTTCCCTCCAGCAAACCATCACTCACAAGACATCACGGTAGTAGCAAGCAATAATGATTGAATGATCCAGAAAATCCTGATTGACAAAATCAAATGCCACCCACGTTTTTTCTCATTTGAGAAGCCATTTCACTTGGATATAAGCCAACTTctatttcatgctgactttaatgacaaaatgtggCCCAATTTACTTGAATTACACTCATGAGGACATTAGCAAATGCATAGCACTTCATGTAGGGTGGTGGTGATTCAGGGCTCTTCAAAACTCGTACTACACTACTAATTTGCTTTTTCAAGTCACAGTCACGACACCCAGACTGATTGATTAGAACCACAGAGCTGTTGCTGTCTTGAGCTGTTGAAAATGGTGCTTCATCGTTAGTCGACGTCATTTCAACCCTTGCCATACTTGCATGGAAATGTATCCTTACAATTAAAGAGTAAAAGTGAAAACAGCTAAGTGAATCTGAAGCTTTGAAGCACAAATCTTGTAAAGACTGACCAAatttagttatataaaaaaCCTGCTTTCTGTAAGTCTGTAAATAGCACAGTGCCCCTCGTGTTGTTTTAGATTTGGCTCCACCCTAGAACTAAGGGTGCTTGAAATATTCTGTTGTGTACCCGacttcaataaatattttaaacgtcTCAAAAAGTTTTCCCTAACGTGTGGATGAGCAGGGCATAGGCCTTTAATGTACTAGTATGGGATCCATTAAGCACTTAGCTTCAGCTCCAATTTCTTGTAGCCACCATGAAATTGGCCTTCAGAAAGCTTTATGAGTTATTTAGGAGCTGCCCTTTTTGTGTACCTACACCAGAAGTTGGTTTTGCGTCAGAATCCAACACGAAATTCCTTATAATGAAGACTGAAAGGCATTAAAATGACTGCACATGCTGTCAGTAGTCTGACAAGGATGAAATATGTTCTCACCACACATAACATCAGGTTTACACACACTGCCTGGGCAACTGGAATTTGCAACAATTCTTTAACCCTAACTGACGCATTTGCATTTGGTATATAATTCTCAAACAACCAAACATGCCCACATCTATATTCACAATGCACAATATAATTAAAGCTGAAGGCGGTACCAGCAAAAAATGGATTCTGTGGTGGTCTTTCCAACATAGGTTCATTCGAAATATGTGCTTCTACATTTctgaaaaactgacaaaaatgtgtctgtatgtactgttcactgcagtttccattGAAAGGAACACTGGAGGCAGTAAAATTCCCATTACAGGATGGCTCTGGTATGAACCCGGTGAAACTATGGTTTCAAAGCTCAAATCCGcttaataaagttaaaatagcacagttgcatcagcaaatacatttttatattgcttttccatttgttaacactatttgGAAGGTTTAGAGTTGGGTGAGGTGTAGgggatatttccaacatgacagaACATTAACCTTTATCAACACCCCCCGAACATCTGAATCCTGAATAGCCGCAATACGTACCTCATGCAGTGTAATAAAAACTCTGCAATATATACCTGTACTGATGTAATAAAAAAGCATGCCACGGTTACAAATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46428 lncRNA upstream 197192 27363588 ~ 27410595 (+) False G31443
TU46427 lncRNA upstream 197192 27407961 ~ 27410595 (+) True G31443
TU46414 lncRNA upstream 201705 27360843 ~ 27406082 (+) False LOC122342806
TU46415 lncRNA upstream 201705 27360843 ~ 27406082 (+) False LOC122342806
TU46404 lncRNA upstream 238605 27297536 ~ 27369182 (+) False LOC122342372
TU46532 lncRNA downstream 92585 27712246 ~ 27713190 (+) True G31520
TU46558 lncRNA downstream 178312 27797973 ~ 27798209 (+) True G31540
TU46561 lncRNA downstream 203745 27823406 ~ 27823705 (+) True G31543
TU46576 lncRNA downstream 292656 27912317 ~ 27951998 (+) True G31549
TU46577 lncRNA downstream 292656 27912317 ~ 27951998 (+) False G31549
XM_043237688.1 mRNA upstream 8529 27460515 ~ 27599258 (+) True pvrl2l
XM_043237687.1 mRNA upstream 64544 27460481 ~ 27543243 (+) False pvrl2l
XM_043237111.1 mRNA upstream 165587 27436433 ~ 27442200 (+) True tcf19l
XM_043237110.1 mRNA upstream 171759 27419543 ~ 27436028 (+) True LOC122342913
XM_043236927.1 mRNA upstream 201699 27390339 ~ 27406088 (+) False LOC122342806
XM_043237686.1 mRNA downstream 3011 27622672 ~ 27649545 (+) True atp1a3a
XM_043236227.1 mRNA downstream 45444 27665105 ~ 27711406 (+) True LOC122342440
XM_043236229.1 mRNA downstream 45444 27665105 ~ 27711406 (+) False LOC122342440
XM_043236228.1 mRNA downstream 45444 27665105 ~ 27711406 (+) False LOC122342440
XM_043236230.1 mRNA downstream 45444 27665105 ~ 27711406 (+) False LOC122342440
TU46402 other upstream 239797 27366230 ~ 27367990 (+) False LOC122342372
TU46403 other upstream 239797 27366351 ~ 27367990 (+) False LOC122342372
TU46406 other upstream 249640 27357443 ~ 27358147 (+) False LOC122342494
unassigned_transcript_953 other upstream 383801 27223914 ~ 27223986 (+) True trnav-uac_5
unassigned_transcript_952 other upstream 466163 27141552 ~ 27141624 (+) True trnav-aac_9
TU46683 other downstream 587297 28206958 ~ 28216248 (+) True G31614
TU46688 other downstream 599072 28218733 ~ 28221417 (+) True G31619
TU46717 other downstream 665366 28285027 ~ 28320694 (+) False G31636
TU46718 other downstream 665366 28285027 ~ 28320694 (+) True G31636
TU46723 other downstream 680366 28300027 ~ 28301346 (+) False LOC122342379

Expression Profile