RNA id: XM_043236245.1


Basic Information

Item Value
RNA id XM_043236245.1
length 2206
RNA type mRNA
GC content 0.50
exon number 17
gene id LOC122342454
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 27383753 ~ 27389398 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCAATGAGAGATCAGCGGGTAAAGCCGTCACACGCAGAATTTCAATTTGAAATTCAAACGGCTAGGAGAGATTTTTGCGCCgggctgtgtttttatAGGAATTAAACGGGATCCATGAACAAAGAGAATACATTATCCCGTCTCCCAGTTATGTCTGGGAAACGGGCTCACACCAACAGTACGGATGGGGAGCAACAGCAGCCTGCGCAGAAAAAAATGCGTAAGGTAGACACAGAACCACCTCAGAGGTTCAGACCTGCGGCTAGTGTTGTGCCCCCAAGACGCCCGGTGGCAGTCAAAGCTCCTGccaaACCTCTTCGTCCAACTGGAGCCGCGACAGTGGCTGCTGCTCCCGCAAGAGGTGACCAGAGAAAACCTGTTGTAGCAGTGTCTAAAGCAGCTGCAGGTTTAGGTGCGTCACGGAGGCCGGGATGGGACCTGAAGGGCAAAGTGAGTGACATGGAGGTCAAAGTCCAGAGCTACCAGggcaaaataaaatctgtaaaccAGGAAAATGAATACCTGAAAGACTCCATAAACAAAGCCCAAAGGCATAAGGTGGAAATCGAAGAAGAAAACAGTGGTCTCAAAAGGCGCCTCAGGAATTGTGAAGAGGAGCTGGAAAAGCTGGCTACTGTGAAAGATGACCTGGCGCAAACCTCTACAGAGAGAGATGGCCTTAAAAAAGACCTCAGCAAGCTAACCCAGGAGCATAAGGTTTTGGAAGGACTCAGGGATCATTTGGAGACTGAGCTCCGCAATATACAGACTCAGCTAGCCATTCAGACGTCTACGCTGAGGCAGTGTCAGGACAGTTTGAAGGAGAGCCAAGAACGGGTCAGGAACCTTGAGGAGACGGTGGCCCATCAAAGAGAAGAGCTCCACCTCGGAGAAATGGAGCGAAGGAAGCTCCACAACACCATTCAAGAGCTCAAAGGCAACATCCGAGTGTTTTGTAGGGTCCGCCCTCTGCTGTCTGGCAATCAATCTGATATTCTGCACATCCAGCTGCCGGCCCATGACAACAAGGCTCTCACACTTGCCAAAACAGAAGAGTCTCACACAGGGCGCACCGCTGACACTCAGAAGAGCTATAACTTCAGTTTCGACCGTGTGTTAGGGCGCGCGACTCTCAGTGTGAGGTTTTGAAGAGATCTCCTGCTGGTGCAGTCTGCTCTGGATGGGTACAACGTTTGTTGCTTCGCTTATGGCCAAACCGGCAGCGGGAAGACCTTCACCATGGAGGGGGGAGACCTGGAGGACCTGTGGGGAGTCATTCCACGTGCTGTCCAGCAGATCTTCAAGTCTGCCAAAGCACTCCAAGAGCAAGGCTGGCAGTACACCTTCACGGCCAGCTTTGTGGAGATCTACAATGAGACTCTTCGAGATCTTCTCTACAAAGGAAAACCAAACAAGAGACCTGAGCATGAGATCAGGAAGGTCTCCAATAATGAGATCACGGTTACCAACCTGACCTATCAGAAAGTCAACAATGAAGATGAGGTGCAGAACTTGATCATGCTGGCGAACCAGAACCGGTCCACAGCCCGCACAGGCATGAGCGATCACTCCTCACGCTCTCACTCTGTGTTCCAGCTAGACATAGAGGGGCAGAACTCTGATCGAGACACCAAGTGCAAGTCCGTGCTGTGTCTGGTGGACTTGGCCGGTAGTGAGCGAGTGCAGAAGAGTCAGTCTCAAGGAGAGCGCTTCAAGGAGATGACCGCCATCAACTCTTCCCTCACCAACCTGGGAATTGTGATCGCCGCTTTGGCCAACAAGGAGAGCTTTATTCCCTACCGTAACTCAAAGCTCACCTACCTGCTCCAGAACTGCCTCGGAGGCAACAGCAAAACTCTGATGTTTGTGAACATAGCTCCTGAGGAGGAGAGCTTCAGTGAGTCGCTGAATTCTCTGCGCTCCGCCAGCAAGGTGAACGACTGTGTGATCGGAACAGCCTCCGCTAATCGGAAGTAGTTTAGCCGTCATTTCCACCGTGgccgtttttaaaaaaaagcttttaatttctTGAATGTCACCTTTTTATCCTCATCTCTCCTGTATTggctacatttttatatttctgtgatgcaatttTAATGTTCTGTATTACTAGCAAAAccttattaatgttttaacagCCGCTGAATGCATATTTCACTGCATCTTGGAAGGGGATCAATAAAATTTCTATTTTGGCATGTAA

Function

GO:

id name namespace
GO:0007018 microtubule-based movement biological_process
GO:0005871 kinesin complex cellular_component
GO:0005874 microtubule cellular_component
GO:0005524 ATP binding molecular_function
GO:0003777 microtubule motor activity molecular_function
GO:0008017 microtubule binding molecular_function

KEGG:

id description
K10405 KIFC1; kinesin family member C1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46386 lncRNA downstream 394799 26988587 ~ 26988954 (-) True G31426
TU46385 lncRNA downstream 481758 26901706 ~ 26901995 (-) True G31425
XR_006250601.1 lncRNA downstream 651127 26731660 ~ 26732626 (-) True LOC122342580
XR_006250546.1 lncRNA downstream 694301 26688613 ~ 26689452 (-) True LOC122342214
TU46371 lncRNA downstream 904820 26478716 ~ 26478933 (-) True G31413
TU46470 lncRNA upstream 9371 27398769 ~ 27400876 (-) True G31472
TU46482 lncRNA upstream 39732 27429130 ~ 27438241 (-) True G31481
TU46488 lncRNA upstream 51268 27440666 ~ 27442686 (-) True G31484
TU46515 lncRNA upstream 168207 27557605 ~ 27649545 (-) True G31507
TU46500 lncRNA upstream 205595 27594993 ~ 27599290 (-) True G31496
XM_043236146.1 mRNA downstream 514605 26865773 ~ 26869148 (-) True LOC122342367
XM_043236144.1 mRNA downstream 690207 26692621 ~ 26693546 (-) True LOC122342364
XM_043236143.1 mRNA downstream 692076 26689984 ~ 26691677 (-) True LOC122342363
XM_043236140.1 mRNA downstream 1357646 26023937 ~ 26026107 (-) True LOC122342359
XM_043236138.1 mRNA downstream 1360509 26022144 ~ 26023244 (-) True LOC122342358
XM_043238050.1 mRNA upstream 19690 27409088 ~ 27415650 (-) True flot1a
XM_043237703.1 mRNA upstream 557598 27946996 ~ 27951997 (-) True pdk2b
XM_043237697.1 mRNA upstream 576911 27966309 ~ 27969769 (-) False LOC122343310
XM_043237698.1 mRNA upstream 576911 27966309 ~ 27969320 (-) True LOC122343310
XM_043237704.1 mRNA upstream 580512 27969910 ~ 27977175 (-) True wipf2b
TU46463 other downstream 926 27379059 ~ 27382827 (-) True G31467
TU46457 other downstream 16104 27366412 ~ 27367649 (-) True G31463
unassigned_transcript_915 other downstream 386618 26997065 ~ 26997135 (-) True trnak-cuu_3
unassigned_transcript_912 other downstream 389942 26993740 ~ 26993811 (-) True trnae-cuc_35
unassigned_transcript_905 other downstream 399194 26984490 ~ 26984559 (-) True trnae-cuc_34
TU46508 other upstream 149957 27539355 ~ 27615941 (-) True G31503
TU46510 other upstream 149957 27539355 ~ 27552593 (-) False G31503
TU46518 other upstream 253294 27642692 ~ 27644732 (-) True G31508
TU46793 other upstream 675899 28065297 ~ 28067762 (-) True eif1
TU46883 other upstream 795932 28185330 ~ 28186778 (-) False LOC122342472

Expression Profile