RNA id: TU46508


Basic Information

Item Value
RNA id TU46508
length 3932
RNA type TUCP
GC content 0.45
exon number 2
gene id G31503
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 27539355 ~ 27615941 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTGTCCAGTCAGGATAAATTCATGTGTGTGGCAAGGTTTGATTGAATCTGCATATTTGATTTGTATGCCAAATTgctgtacagtatgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgcgtgtgtgtgtaaatatctAGTGTTGACATCTTGTCATGTTGAGGGGTGAGAGAGCAAACAGTTGTCAGTGCAAAAAGTTTGTGCGCGAACGTCAATCCGTACTGTACTTTCGTAGCAGGCCGTGTGCCAGTCACTAACTAGTGTGCGTCTGGGAAGCTACATCTGCTGAACGCGCAGGATTCCCGCCTGTCTAAATCACAGACTCAAGGCAGCTGAGGTTATTCTCATGTCTACTCCGGGCTATTATACTACATCTGCTTTATATTTGGTGTTGGCCATAGCTGACCACTACGTCTGTTATTTACAGTACCGATAAATAACACTTTTCTCTCACCGGATTTCTCGatgataaatacatacatatacagtatatatatatctcacacaCAGGACACGTCACGTCAAGATACACACCATCAACACCTCACAGGATAGCACTGGTTTCCATCCATAGTATATAACAAACTGGACAAAAAGAAGAGTATAGTTTGTTCTCACAAGTTTTGACAAAGATCTGTTGCAACACAGCAGTCACGTGACGTGATATGAACCTGTTGCGGTTTTTTCATACACATAGCGCCACAACCtgacaacacaacacaacattcAGAGCGGATGAATAATCAGCTCCGCAGCTGACAAGTTAATAATGACTTGCACCATAATGCGGAGCAATTAAGTAGCATCACGTGGGGACAATTTGCCGTTGCTCAGGCggtcttgtttttcttcttttcttaatATTGTTGATTGATTGCAGTCTTTAAAGTCTGGCATTCGTTTACAATATATAGAATTTCAACATCGCATCCAACCCTTAAACACGTCCCAGAAGGCACTTACATCAACTTATCAAAACATGCgtttttgtttcacaatattgAGAACATGTGGATAGATGGTATCTTTCATCTCCAAAGtccaggtcatatttcacttcaaaattaaaatctgcTAAATTGCGTTACGGGGGCCTGTTTTATTAAACAGGTGCTTTATtgtatacatgaaaaaaaaaaaataataacaataaatcaccataatttacaacaaaacacaagatccTTCATGCGAAGTAAAGCTCTTTTGCTTCCGCAGTAAAATGTGACCCAGACATATTCTTTACGGGGTTCTGCCcaattattatttcagaaattAAACTTAACGTAGCCTTGGGATCGTGTGAATGAGGACATGGCATCACTATGTAACCCTTAACACTAATATTCTATAATGACATTCAGAGAAGTTCAACAAAAGAttctattaaaacacaaatattaaaagttgTGAAAACTTGATTTGGCAACATTGCTCTTTCAGCACTCTCGAGTCTCGAATGGTATTTGAAAAGTCAAACGTTCAGCACAGTCACTCACAATACATCACAGACCTCTCCGAATGCATGAATAAGCCTGACATTGACTCCAAATTCACACTAAACAGGTGAAGTTAATACCTTTGCCACTGCTAACAACACAATATTCACTGGCTCAAAAAGCTCCCCgttttctcgctctctctccacTTCTTCATTTTCGTTGTCGTTATCAGCTCGAATATTTCAAGGCCCGAGCAGCTCTCAGAAAAGTAGCTTTGCCATCCCTATTTTTCAGTGCAGTGATGCAACTTGAAGCGCTTTAGGGAGGGGGATAAAATTAACAGCCTTGCAAGTCTGCAGCGTGGGTGAACACTGTAGGCTAGAGTAACTACCGCCTTTACAGTCACTGGGTCCAGATAGTATAATCTCCAAATTACTCATGCTATATCTGCTTTGCTGGATATGGAGTTCTGTCTGGGTAGCGTCGCATCGGTGAGCGTGTTGCTCCTTTGTCATTATCGCTCTAACCTCCCTCCACCGAAGGCTCGATGCTGTGAAACCAAGGATGAATGAGTCATGGCTCAAGTAATTCAAAGCACTGCCGAAGCGTCCATACAAGCGGCACGATGTTATGCAAAGCACGCGCTCGCGACAACCCAGAGACTAATGAATCCACATCTGGGCGCACGTTGTTGCATACTCATAGTTGTCCgaaatgtcttgttttgtagTCTAAAAAAAGTCGGCTTATGCATGGGGCTTCAAAACAAACCGCTGACCGGCTCTAGAGGGACTGGGTAAAGCGAGTGGCCTAATCTCGCTGCCGAACATACGGTGAGAGCGCTTCGCCCCTTGACCTTTTTTCACAGCTGGCAGCGTTTCAACACCGCGGACTCCGCTGAACCGGGCAGCATATGCCGCTTGGCTTAACGCTCCCCGCTGAGGTCCGTCAAGAGCTCCGCCGTCTGCATAATCCCACACTCAAAGGCACGTCAGTTGCGTTTCTCTCAAGGCCCAGCTTCTGCCGCCAATCTACGATGTGCATTAATCTACTTAATCTGTTTTAGCGAAGTTAAAAGACAGCTCGGTATAGACTCCAAGCCTATTTCCTCCTGGAAGGATTCGTGCTGAAGCTAGTCGTGCTCCTGTCTGCAGTTTTTTAGATGGTTGAGCTCTATGGTTTTGATATAACTGGATTAATCAGGGGTTGGAAAAAACATGCATCAGCCAAAAACGCACGCGGCTAATGCACGACACTCTTCTGAATTAAACATGGCCCGGAACAAACCGTTCTGCAGAGGTTGACAGgagagtaaaaaacaaaaacactattaCGCCTCTGCCTAGAACCCCTCGAGTCATTCAGAAAATTCCTTTAGCGTAACAAGACATCCGATTAATAAACGAGAGCTAAAAAATAGTGGGGAAAAGTTAAAAGCGTTCACAGCTGGAGTTGATCGGCGCCACAGATGAATGACCCAGATGCTAGAGCGAGCGCTGCTTTGCCTGCTTTCGGTTTCACTAACAAAACATCCAGCTGTTCTCCAAGACGACATTCCCGGGATTTGATAAAAGAAGCCTGCCGTATGCAACCTGGAGAGAGCAGCCTTAGCTTCTAGGTCACAGCTTGCTGAGCCACTCATTGACAATCCTGTATGCTTAATCACAAGGCTTTCTTTTCACTTCAAAGAGCCTACTTGAGTACTGTGCATCAACCACCAAAGATGGATTTGGGCTAGAATGGGCATTAACGAGAAGTTACAGTTTCACAACAACCAAATAACTTACTTTTTTGTCAGTATTATAAGTACGCATGTATGTGAGATGAGTAGCATTAGTTTGTGTTTTCGGTTTGATAAAGTGTTTTCGTATACAGATGTGACATTAACCGTTCTGCTTCCGCTCCTCAGATGGCAAGTTTCCGTCTTGTTGTTTTAAAAGGTCAAGTAAATATCAGTCAGGTGTATCATCTGCTTCTTCTAGACATAAATAGCAGTCCGGGAGATGATGGACCCGTCTCGCTGGGACTCCATGTCGTCGTCCAGGTAAGGTACACACTCGTCTTCGTGCCGGTGGATTTGGTAGCTGGGCGGCAGTCCGCTGAAACGGTCGTACCTTTCgtcctcttcttcatcctccAGGCTGTCGTTGAGAGCGTCGAACTTCCTGCGCTCGGCCTCGTTCATATCGCCGCTAAGCAGGATGTCATGGGCGGTTGGAGTGTTTCCGGTCATGCGCGGGAACTCGTTGCATTTCTCTGTCAGTGAGCCTGGGTCGCTCTCACGGTACGTATAAATCGGCCCATTGTTGTTGGCTCCCGCGCCGTTCTTACTAGCCTTCTTGCCTCCAAAAAGACGTGTTTTGTTGCCATAAGCGCCCTGCTCGCCATCGCCCGAATATCCGTGCTGATGGCGACGACTTCGCATAACTAAGACGGCGACCAACGCACTGACCAAAATGAGCGCCAAGAAGCTTCCCAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46488 lncRNA downstream 96669 27440666 ~ 27442686 (-) True G31484
TU46482 lncRNA downstream 101114 27429130 ~ 27438241 (-) True G31481
TU46454 lncRNA downstream 133274 27360904 ~ 27406081 (-) False G31462
TU46455 lncRNA downstream 133274 27360904 ~ 27406081 (-) True G31462
TU46470 lncRNA downstream 138479 27398769 ~ 27400876 (-) True G31472
TU46516 lncRNA upstream 20337 27636278 ~ 27649545 (-) False G31507
TU46529 lncRNA upstream 29085 27645026 ~ 27646425 (-) True G31517
TU46788 lncRNA upstream 204083 27820024 ~ 27820253 (-) True G31692
TU46821 lncRNA upstream 282826 27898767 ~ 27904683 (-) True G31718
TU46829 lncRNA upstream 304679 27920620 ~ 27923176 (-) True G31723
XM_043238050.1 mRNA downstream 123705 27409088 ~ 27415650 (-) True flot1a
XM_043236245.1 mRNA downstream 149957 27383753 ~ 27389398 (-) True LOC122342454
XM_043236146.1 mRNA downstream 670207 26865773 ~ 26869148 (-) True LOC122342367
XM_043236144.1 mRNA downstream 845809 26692621 ~ 26693546 (-) True LOC122342364
XM_043236143.1 mRNA downstream 847678 26689984 ~ 26691677 (-) True LOC122342363
XM_043237703.1 mRNA upstream 331055 27946996 ~ 27951997 (-) True pdk2b
XM_043237697.1 mRNA upstream 350368 27966309 ~ 27969769 (-) False LOC122343310
XM_043237698.1 mRNA upstream 350368 27966309 ~ 27969320 (-) True LOC122343310
XM_043237704.1 mRNA upstream 353969 27969910 ~ 27977175 (-) True wipf2b
XM_043237153.1 mRNA upstream 365129 27981070 ~ 28037700 (-) False jupb
TU46464 other downstream 152937 27385805 ~ 27386418 (-) False LOC122342454
TU46463 other downstream 156528 27379059 ~ 27382827 (-) True G31467
TU46457 other downstream 171706 27366412 ~ 27367649 (-) True G31463
unassigned_transcript_915 other downstream 542220 26997065 ~ 26997135 (-) True trnak-cuu_3
unassigned_transcript_912 other downstream 545544 26993740 ~ 26993811 (-) True trnae-cuc_35
TU46518 other upstream 26751 27642692 ~ 27644732 (-) True G31508
TU46793 other upstream 449356 28065297 ~ 28067762 (-) True eif1
TU46883 other upstream 569389 28185330 ~ 28186778 (-) False LOC122342472
TU46919 other upstream 748084 28364025 ~ 28365196 (-) True G31776
TU47051 other upstream 1228252 28844193 ~ 28846421 (-) True G31868

Expression Profile