RNA id: TU46515


Basic Information

Item Value
RNA id TU46515
length 979
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G31507
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 27557605 ~ 27649545 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGAGAAAAGAGAGAtccttcttttttatttcattttttgctgttgtttcaCGTATTGGTACATTgcttttattccatttttttctgcacTTATTTAAACAATGAAATCAGAGAGAAGTCTCTTTTTCCTAGGACACAGAAAGattgtattttctcttttttaacgGGGAAAGAGGGGAAACGGGGGCGGATAGAGGAGGGCGGCTTCTTCACATCGTTCACGAACAGACAAACAGACGGGgacagagagacggacagaAGGAGCAAGAGCTGGGAGGGAGGGGGGAGTGCAGGATAAAAGGGGAAGGAAAGGaggagcgagagaaagagagagagagagagagagagagagagaaagagtgaaaggGTGGCAGTGTGCTTTGTCATGTCCGAGAAAAATGAAACCAAGCAGCTCTCAGACACACTtctaacgtaaaaaaaaaaaaaaatcgaacaaaaaagttatgaatgattaataaaaacaacactcGAAAAACAAGAagcacattgaaaaaaaaagaaagaaagacagacaggtGCCGGATAGGGGTGAGGAAAGCTGTGCTCCTCTTTTTCCCCAGCAGAGGGCGAGGGTCTAAATGAGTTATGATCTTCAGGTTATTAGTATTTTTGGAGGGTAAAGATAACAGTAATCTAGCGTGGCAGTGTTTGTACAGGAGTCCCTGTCGACCGTGATTGAGTCTGAACGCAGCTGCTGGGTGACATCCATTACAGCGTGGTAAACCTTACTACTATCATACTGGCAGATTCAGCTGTAGTCTTTGGGCAGAAacggaacaaaacaaaaacaaaggagCTTTGTCGTCTTCCTCTGTGGTCGGGCTTCTCATCTTCTTGCTTGTTATTTCGGTAAAAGGAAGGAGTGACGTGGTTGTTTCGGTTTTGGAGGAATGGTTGGaatgtgaaaaagagagagagagagagagagagagagagagagagagagagagagagagagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46488 lncRNA downstream 114919 27440666 ~ 27442686 (-) True G31484
TU46482 lncRNA downstream 119364 27429130 ~ 27438241 (-) True G31481
TU46454 lncRNA downstream 151524 27360904 ~ 27406081 (-) False G31462
TU46788 lncRNA upstream 170479 27820024 ~ 27820253 (-) True G31692
TU46821 lncRNA upstream 249222 27898767 ~ 27904683 (-) True G31718
TU46829 lncRNA upstream 271075 27920620 ~ 27923176 (-) True G31723
TU46834 lncRNA upstream 292134 27941679 ~ 27942804 (-) True G31728
TU46844 lncRNA upstream 430630 28080175 ~ 28080381 (-) True G31736
XM_043238050.1 mRNA downstream 141955 27409088 ~ 27415650 (-) True flot1a
XM_043236245.1 mRNA downstream 168207 27383753 ~ 27389398 (-) True LOC122342454
XM_043236146.1 mRNA downstream 688457 26865773 ~ 26869148 (-) True LOC122342367
XM_043236144.1 mRNA downstream 864059 26692621 ~ 26693546 (-) True LOC122342364
XM_043236143.1 mRNA downstream 865928 26689984 ~ 26691677 (-) True LOC122342363
XM_043237703.1 mRNA upstream 297451 27946996 ~ 27951997 (-) True pdk2b
XM_043237697.1 mRNA upstream 316764 27966309 ~ 27969769 (-) False LOC122343310
XM_043237698.1 mRNA upstream 316764 27966309 ~ 27969320 (-) True LOC122343310
XM_043237704.1 mRNA upstream 320365 27969910 ~ 27977175 (-) True wipf2b
XM_043237153.1 mRNA upstream 331525 27981070 ~ 28037700 (-) False jupb
TU46510 other downstream 5012 27539355 ~ 27552593 (-) False G31503
TU46464 other downstream 171187 27385805 ~ 27386418 (-) False LOC122342454
TU46463 other downstream 174778 27379059 ~ 27382827 (-) True G31467
TU46457 other downstream 189956 27366412 ~ 27367649 (-) True G31463
unassigned_transcript_915 other downstream 560470 26997065 ~ 26997135 (-) True trnak-cuu_3
TU46793 other upstream 415752 28065297 ~ 28067762 (-) True eif1
TU46883 other upstream 535785 28185330 ~ 28186778 (-) False LOC122342472
TU46919 other upstream 714480 28364025 ~ 28365196 (-) True G31776
TU47051 other upstream 1194648 28844193 ~ 28846421 (-) True G31868
TU47079 other upstream 1323808 28973353 ~ 29012765 (-) True G31890

Expression Profile