RNA id: TU46585


Basic Information

Item Value
RNA id TU46585
length 2275
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G31551
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 28372385 ~ 28375787 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AgcatcttgatttttttttttttttttttttagggatcGTTCTGTACACGCATTCTCAAACTAAACGTGTCGAATCTAATCCAGAATGAACATACGGTCTTATTGACAAGGCATTTCAGCATCACTTTTTCAAACCGATAACCTTCCGATAATACTGTGCATTCCTAAAAGAAACTCATGCAAAAGCTAAAAGCTgtcaaaaacaagcccagaagGAGTGAGTGAAGAGGAAAGGTCGAGCGCAACGAGAAAGGAAATGAAGATCAAGCATGCTGGTCTCAGGAAGCTTTGAGCTCACTCGCAACGAACCAGCTTTGTTAAGGCCAAGAGATTTAATCTGCTGATGAATATTTCCAAGTTCAGGAATATCTGGGCATTGAAATATGCCAAGCTTGAGCACATGGATGGATTTAATCAAGCTCGTCAAGAACAGGcagacagaaatatatatatatatatataaagatcaatttaaatgttaaaatgaaccGTGAGCTTCAGCGAAGGCTGTTGTCTGTAACTGACCCTGACAaaactcagaaaacacaacCAGCTAGTGAAggcaaaacacatgcatatgaGAGAATAAAAGTCATGAAAGATGCtttggcattaaaaaatattacggGCTAAACACTAAATTTACAATGGGGTACAGAAGTCAGAGAGTACACTGAACATTTAGGACAGAATTTAAAAGCTTGGGGATTTtagaaagcaaaataaatgttacgaaattcaaataatatttcagattctGGATTACTTCCAGGTGAAATGCAACGCAGTGCATGAAGTGCAGAAACGTTTAGGTTTAGacagaattaaaaaacaacatggTCTCTAGGCTTTTGGACCCCATTGTACAAACATACCTTTTTATTGAAAGGTAAGTGGTTTAACAAAAAGACAAGcatcacatttctgtttttaaatgtccCGGCAAATGCATTACTGTACCCATCTTCGAGAAGTTGTATTTAACCcgtaacatttttttggaaattccttttattttttttttttttttttaggatgagTAAGTTGTGAGTGAAAACACGAGGCATGAGTCAGGTACTCTAACGTGTACGAGTGTTGAAGTGTGTGTCAGCAGGGGGCGCTCTCACCATGTGCTGGGTGCGGACGGCCTCCAGAGGATAGTCTCCTTTAGCCGTCTCTCCGCTCAGCATGATGCAGTCGGCTCCGTCCAGAACGGCGTTGGCCACGTCGCTGCCCTCGGCACGCGTGGGGCGAGGCTTCTTGATCATGCTCTCCAACATCTACAAAAAAAAGCCCTGCTGATTAATATTACACGAGAGCATATGACAGACCTGCTTGAAGTTGAGATGTATTTTCCGGAGAATGCATGCTAATGAGCGAGCCTGGAGCACAAGCGCAGTCATCGGTAGcacatttgaatatttgtattaatagaaaacaatacatcaaaatgatcaatttttcATGTAtgctaaaaatctttttttttttttttttttaagtaaagatcatgttccatggagatattttgtaaatttcctgccataaatgcataaagttAATTTTTGGTTAGTCATATGCATTACTGAGAACTTAAGtagttttgtattgtgtttgatATTCAGAAGTTGTATAAATCTTAGAAAttacgactggttttgtgaGCCAGTATCAGACATGGGGTTGTAGGCTAGCTGACCTGAGTGGCACAGATGATTGGCTTTCCTGCTTTGTTGCAGCGACCAATCATCATCTTCTGGGCCAGAAAGACCTTTTCTGTGGGGATTTCAATACCAAGGTCTCCTCGAGCGACCATGATGCCATCACTGGCCTCCATGATCTCATCAAACCTGGTCAATAAAAGGAGACGCATTCAAACCCAAGTCATTTTTACACATCTAACGGGAAGCGGGAGTCACCCCCTCACCTGCGCACGCCCTCGTGGTTCTCCAGCTTGCTGATGATCTTGATGTTCTTGCCCTTCTCTCCCAGCACTTTGCGCACCTCGTGCACATCAGCTGCCTTGCGGATGAAAGAGGCAAAGATCATGTCGACTCCCATCTGCACGCCGAACTGCAGGTCCTTGACGTCTTTCGCGGAGACGGCGGGCAGGTCGACCGCGGCACCCGGCAGATTGACACCCTTCTTACTACCCAGAGTTCCTCCGTTCTCAATTTCACACAGCAGATAGTCAGAACCTGAGGAAGAGACGTAATATTCATCCAGCAGAAAAAGATGATTCTGCACATAACACAGCGTCCACAGTAGAAGCGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46711 lncRNA upstream 102900 28270102 ~ 28270584 (+) True G31631
TU46694 lncRNA upstream 145183 28226400 ~ 28228301 (+) False G31621
XR_006250633.1 lncRNA downstream 4825 28380612 ~ 28385954 (+) True LOC122342705
TU46742 lncRNA downstream 145197 28520984 ~ 28541933 (+) True G31653
TU46741 lncRNA downstream 145961 28521748 ~ 28522333 (+) False G31653
XR_006250587.1 lncRNA downstream 192498 28568285 ~ 28593867 (+) True LOC122342517
TU46760 lncRNA downstream 271190 28646977 ~ 28652833 (+) True G31665
XM_043236221.1 mRNA upstream 6006 28360946 ~ 28367478 (+) False dhdh.2
XM_043236222.1 mRNA upstream 6029 28360946 ~ 28367455 (+) True dhdh.2
XM_043237531.1 mRNA upstream 13242 28354430 ~ 28360242 (+) True dhdh.1
XM_043236153.1 mRNA upstream 55902 28297302 ~ 28317582 (+) True LOC122342379
XM_043236151.1 mRNA upstream 172473 28197236 ~ 28201011 (+) True LOC122342376
XM_043237898.1 mRNA downstream 11720 28387507 ~ 28410310 (+) True LOC122343436
XM_043237901.1 mRNA downstream 11720 28387507 ~ 28410310 (+) False LOC122343436
XM_043237902.1 mRNA downstream 11720 28387507 ~ 28410310 (+) False LOC122343436
XM_043237903.1 mRNA downstream 11720 28387507 ~ 28405080 (+) False LOC122343436
XM_043237900.1 mRNA downstream 11988 28387775 ~ 28410310 (+) False LOC122343436
TU46732 other upstream 20258 28350353 ~ 28353226 (+) True G31649
TU46717 other upstream 52790 28285027 ~ 28320694 (+) False G31636
TU46990 other downstream 454853 28830640 ~ 28893627 (+) False LOC122343276
TU46989 other downstream 511366 28887153 ~ 28893627 (+) False LOC122343276
TU46991 other downstream 511366 28887153 ~ 28893627 (+) True LOC122343276

Expression Profile