RNA id: TU46605



Basic Information


Item Value
RNA id TU46605
length 503
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G31567
representative True

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 27931981 ~ 27934142 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GAAAGTTTGGTTTGGCACCGTTTATATTGCAGGTCAGAATAATAAGAGCCTGTGTGCCAGTAACATTGTTTTGCATGCAGAAGTGGTGACTAAAAGCGCGACAAATCAGCGATGGGGAAATCACATATTGTTATTTTGAAGCGGTGCTTGGTGCCAGTATCTTCATCGACAATCATATGAGAACACTTTGGTGCCTCCACGTCTTTCCATAACGACACAGACACCTCGTCATAATGACGCTAATGATTGTACTTCATGAGCCCTTGATCTGTCCTTCACGTGGAACGACTCTGATATGACGACTAACAGTAGTGTTTATAAAATCTGGAGATATCACCTCCTCTCAGTCTTCTGCTCGGAATACGCTCTTTCGTATTTTATCACAACAACCAGGGTCAAATGCAACAGGATGACATCTACTACaagtcaaaaatatatatgttacataaatacaaataacactCACATAGACATTGCATTTTCAACagcaaagttgtttttaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU46561 lncRNA upstream 108276 27823406 ~ 27823705 (+) True G31543
TU46558 lncRNA upstream 133772 27797973 ~ 27798209 (+) True G31540
TU46532 lncRNA upstream 218791 27712246 ~ 27713190 (+) True G31520
XR_006250746.1 lncRNA upstream 315123 27607787 ~ 27616858 (+) False LOC122343300
TU46571 lncRNA downstream 26805 27960947 ~ 28067790 (+) True G31548
TU46573 lncRNA downstream 26805 27960947 ~ 28067790 (+) False G31548
TU46575 lncRNA downstream 26805 27960947 ~ 28067790 (+) False G31548
TU46572 lncRNA downstream 85725 28019867 ~ 28067790 (+) False G31548
TU46642 lncRNA downstream 186110 28120252 ~ 28121159 (+) True G31596
XM_043237769.1 mRNA upstream 8772 27909429 ~ 27923209 (+) True si:ch211-264f5.6
XM_043237887.1 mRNA upstream 27113 27832840 ~ 27904868 (+) False LOC122343426
XM_043236358.1 mRNA downstream 495 27934637 ~ 27938820 (+) True LOC122342524
XM_043238045.1 mRNA downstream 7534 27941676 ~ 27945292 (+) True zgc:174904
XM_043237700.1 mRNA downstream 18007 27952149 ~ 27964230 (+) False si:ch211-264f5.2
XM_043237699.1 mRNA downstream 19308 27953450 ~ 27964224 (+) False si:ch211-264f5.2
XM_043237701.1 mRNA downstream 20224 27954366 ~ 27964224 (+) True si:ch211-264f5.2
TU46402 other upstream 563991 27366230 ~ 27367990 (+) False LOC122342372
TU46403 other upstream 563991 27366351 ~ 27367990 (+) False LOC122342372
TU46406 other upstream 573834 27357443 ~ 27358147 (+) False LOC122342494
unassigned_transcript_953 other upstream 707995 27223914 ~ 27223986 (+) True trnav-uac_5
unassigned_transcript_952 other upstream 790357 27141552 ~ 27141624 (+) True trnav-aac_9
TU46683 other downstream 272816 28206958 ~ 28216248 (+) True G31614
TU46688 other downstream 284591 28218733 ~ 28221417 (+) True G31619
TU46717 other downstream 350885 28285027 ~ 28320694 (+) False G31636
TU46718 other downstream 350885 28285027 ~ 28320694 (+) True G31636
TU46723 other downstream 365885 28300027 ~ 28301346 (+) False LOC122342379

Expression Profile