RNA id: TU46760


Basic Information

Item Value
RNA id TU46760
length 1845
lncRNA type inter_gene
GC content 0.33
exon number 4
gene id G31665
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 28646977 ~ 28652833 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

atatatatatatatatatatttttttgcattgAAGCCCAATTCCGCCAaggaatgaaaatataaaattcacaATGGTGACCtttttatctcgcaattcattctgagtttatatctcacatttTTCTGCCTGAGTTTACATCACAAAACTTTGACTTCATATCTCACTTTTTTCCTTGTGGTTGTGTTTCATAAGTCTAACTTTTGTCTCATAATTGTCTGACAGTTGTCactttttttatctcataattcgCTTGATATgtcatctgctaaatgactaaatgtaaatgcaattgtctcataattttacattttgatctcataattctgacttatGTCTAATAACTTCACATTTGTCTTAAATTTCTGACTGTGACATGTCTCATAATATTGAGtttcataattctgactttttccttGTAATTGTGTTTATATCTCATTATGATAACTTCTTCCCTGTAAGTTAATATATCCTAAGTCTGACTTTTGTTCCGTAATTGTTTACATTTCACGATTCAGacattttttctcataattgtgtttatatctcataattctgacttttgtCTCATAATTTCGAGTTTCTCATAATTCATCTTTTTGTCTCATTATTGTGgttaatatctcataattcagccTTTTGTctcattattatgatttatatctcataattcagctTTTTGTctcattattatgatttatatctcataattcatcACTTTTGTCTTGTATTTGTGAGTTTATGTCGCTTAATTCAGACTTATTTTAGGACTGTGAGAAattctgaattgtgagataaatatatatatatatatatatatatataagattctTCCAGATCTAGAGATATTTTGAAGCTTCATTCATTGGCAGATGACAAGCATATCCAAAAACCTCTtcacagttcatttaaataaacgaTGCATATGATCAAAAGAGAAGACATAACTCAATGAGAATACAGTTTCAAAGTAAAAGTCCTGTATcgaaaaacaaaagaggaaatgaaCAACACGAAATCAAATCCAAACGAATCAAGAACGGCCTCAAAACAGTCACTCTTGAACCTTATGATGTTCTCgagaggaagtgatgtcatcaCACGACAGTCCAATCAAAGCCCGGTCACACGGGAGATTCACAAACCCTCGGCTTCGACGTCAAAATAAATCAGAGCATTTACCAGCTGAATATAAAAGTCACTGTGATCTTCAAAGACACAAAGAATATTTTTTCTACAGTACTCCtcataaatacttttatagcTTTCGTCTCTTAAACTCAGTGAATATATTAGTTGTCTTTTCCCCCTCATTGATGTAGAATATGACTGAACGGAAccattcataaaaaatgtatggcagcacacatactgtatatcattctgaaaataaaacacttttttatcaacaataaataatagtttatgcTAATTGGGCACAAATAATGTTACAGAAAACATGAGGTATTAGGTTCAAAATCATACGAATAGCACGATGTCAAAAATACATGGTCTCAATGATATATCTTTATCATTTTCTCATCACGTTTGACAGTTTTTGCATTTGAGAAATAAACGTATTTAATTGCTGTGACAAACAGGCTTCACGTCATTCAGCAAATtcactttttgattatttcacGGTGAAATATGACAGATACGAGACCTCCGAGCGGACGAGGCCGCTGCTGTTAATCTCTGAATCAACTCGTGTAAACGTCAACGGAAGTCGCAGGAGGGTAGAAAAGCGCAAAAACGAACTAGCCCGGCCCAGCGCTGAACCtggaataaatacagaaaaaccaGTCAAAAAGACCAGGAGCAAAGGTTACCCGAAACCACGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250587.1 lncRNA upstream 53110 28568285 ~ 28593867 (+) True LOC122342517
TU46742 lncRNA upstream 105044 28520984 ~ 28541933 (+) True G31653
TU46741 lncRNA upstream 124644 28521748 ~ 28522333 (+) False G31653
XR_006250633.1 lncRNA upstream 261023 28380612 ~ 28385954 (+) True LOC122342705
TU46588 lncRNA upstream 271190 28372385 ~ 28375787 (+) False G31551
XR_006250740.1 lncRNA downstream 177802 28830635 ~ 28831298 (+) False LOC122343276
XR_006250780.1 lncRNA downstream 203298 28856131 ~ 28858515 (+) True LOC122343449
TU47023 lncRNA downstream 344895 28997728 ~ 29002977 (+) True G31845
TU47024 lncRNA downstream 350963 29003796 ~ 29023855 (+) True G31846
TU47027 lncRNA downstream 352449 29005282 ~ 29024602 (+) True G31847
XM_043236154.1 mRNA upstream 51982 28593877 ~ 28594995 (+) True LOC122342381
XM_043237683.1 mRNA upstream 109645 28421249 ~ 28537332 (+) False celf6
XM_043237684.1 mRNA upstream 109645 28421249 ~ 28537332 (+) False celf6
XM_043237685.1 mRNA upstream 109646 28421249 ~ 28537331 (+) True celf6
XM_043237900.1 mRNA upstream 236667 28387775 ~ 28410310 (+) False LOC122343436
XM_043236156.1 mRNA downstream 317418 28970251 ~ 28993117 (+) True LOC122342385
XM_043236158.1 mRNA downstream 352932 29005765 ~ 29034527 (+) False LOC122342386
TU46732 other upstream 293751 28350353 ~ 28353226 (+) True G31649
TU46717 other upstream 326283 28285027 ~ 28320694 (+) False G31636
TU46990 other downstream 177807 28830640 ~ 28893627 (+) False LOC122343276
TU46989 other downstream 234320 28887153 ~ 28893627 (+) False LOC122343276
TU46991 other downstream 234320 28887153 ~ 28893627 (+) True LOC122343276

Expression Profile