RNA id: TU46812


Basic Information

Item Value
RNA id TU46812
length 2611
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id LOC122343220
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 28282039 ~ 28319833 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gctaattaaaatttttactttaatgaaatttagttggaaaatgtgcaaaacattgAACAGTGccatctaataaaatatttcctatatatatttcttattaggGTGACATGCAGTATACAGCGTGAAATGAGTACAGTACTCAAGAGTGATAGAAAACAGCACGcgtttgtgatattttgtttcaaaatatcaAGTGTTTGACCAATTATTTTCTCAATTGGTGGCACACGATGAATCCATCATCCAGTTTCGTTGCTTCTGTGAAGttgtttcctttgttttttcattaaagacTGAATGGGCCTCTTGTAGACGCAGGTCACGGTGATTAATCCAGAGAGTTTGGGAGACGTGCGAGATGTCGGATCAATCAGGAAGACGATGAACAGACAATCTGGATTTGAAGGACGTAGGGAGGTGCTGACGTTCAAGCACAAACATGCTCAAGCGGTGTTCAGTTAATGCCATCGAGACTTATTTCAGCCTAAAAGAAAAAGGAGCATGTTTTACTCAACCTCAAGCTCTCCTAGGTGTGTATGCCTTTCCTTTTCACACGAATCCATTCAGAGTTATATTAACAAATGTTGACCTCAGGGTCATGATTTATATACGTGTAGTAAATACAAGCTAAGAGGAGACTGGTTTTGGTCAATAAAGTTGGGTTTTGGTCGTACTCTTTACCTCAGTCACCAGAAGGGACAGGAAAGTGTTAATAACTCCGGTTGGATTCGCCCGGAAAACATTTCTACACCCCCAGGCTGGCTTGAGGGCGCGCCAAACACACGCCAGCTTTCATTTCTGCCGGCCGGTACACAAACGCGCCGTTAGCAGCGTTTGCATGTTTAGCGGTCATGCTAGCTTTGCGCTCCGTCGAGGGATGCTACTGCGTTCCCGCCTGTAGAAAATGCAATGCCTAGCGTGGTTTCTATGACTTAATCTGTCTTAATGTAACGTGCGTCTGTAAATATGATTGTAAACCGATCTCGAATGACATTCTGATCacgttgtcttttttttgtcactaatagcctaaataaagtatttttagcaGACTCACCACATGCCTCGACGCGTGCTGTCACAACGGAAGTAGTGCTGTTCGTGTTTAATTCTCATTCATGTAATAAacgctgcattttttttacaggaacattaaatataaaacgaaCGTGGTGCcttttacacacaaaacaccAGACGGATGCGTTCAGGTTAGTTTCTGAGGCTACAGCAAGACAAGTACGTGTGTTGAAGGACATGTTCGGTGCGAATAAAGGCCGTGAactgaatgaagaaaaagacacaaaactAACAGATCCAACTTACTTCTGCCATGTACACGAGCATCAACATTTCATTCCAGTATATTGATCTATGGACCTCACAGAAACATGTCAAAGTCATATTTCACCCTAAAATCCcaaagaaaagacatttaaatgtgttttcaagaGCATTTGAGTAGTTCATTTAGCCTAGCGCGTCTGGACATTTTAGTTTTGCCGTCCTCTAATCTTTCGCTCTGCGTGTTTTTAAGACAAACACTAACGCTGCAATAATTGGACTTATAAATGAGGCTAGAAAACAAGGTTTCATTTTCCCTATGtgcaaaaatcttttttctttagGGTGAGACATGACCTGTTCCTTAAAACGAGTTTAACAAATAAGCCAGGCTTATACTGAACCGGATCAACTGACAGTAAGTCAGACTAAGTGAAACAAGcctggcttatttggtaaacttgATTTGTGAAACAGGCCCAGGATAGGTTTTTTATCCATTTCAAACCGATTCTGCATTTGCTGCGACTCAAAACCCATTGCTTGTGGAAACGAGGTTACAGAGTCGGATTTAAAGATGTTACGTAACCGTTTTTGAAGgactagttcacccaaaaatcaactttcatcagctgtttggactgcaGGACGTCCATCGATGGGTTGGTAAATCTAAACGAGTTCAAATCGGTTTCCATTAAGAAACAGAACGATCTGCATTTCGAGGATTTGAATTTTCGGCTAAACTATTCCTTCAAGATGCGGGTAGAAAAAaaagtgactcgttttccaaaataaacgttaaaaGGCATGTCGTTGAggtgcaacatttaaaaaaaaaaacaatcaatcaatcaaagaATTCTCAAACGGAACACTAAAATCCGAACGGctataaaagtactttttttgctGCCTTTAAAAATACGCATGCATACCCCTTCGGAAGCTCGCGCGGCGTTTTTCTGAATGTTGAACAATCCAAACGCCGTTTGGGAGGAATACAGCACAGTCCGCTTCTAGCAAAGCCGTTCCAGTTCATATTCAACTTAGTGATgcgtgaccctggagcacaaaaacagtcatGAGAGCTGAGAGTCGTACGGCGGAAATCGTTCCGTCGgcgtctggtttgttaggataagaCCGTATTTGGCTGAGGTGCAATTAtttctggaatctgagggtggaAACAAATCAAGATATCGAGAAAAAGTCCAAATACGTCTTACTAATCGCAAATGAGGCTTCGATATGTTTACGATAAGAAATGCACAAGATATTTTGCTTAATAGTCTAAGGCATCAAAGAAAGCGTTGCCGCCTAc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46905 lncRNA downstream 31932 28244990 ~ 28250107 (-) True G31765
TU46888 lncRNA downstream 53738 28226414 ~ 28228301 (-) True G31759
TU46889 lncRNA downstream 53738 28226414 ~ 28228301 (-) False G31759
TU46891 lncRNA downstream 53738 28226414 ~ 28228301 (-) False G31759
TU46898 lncRNA downstream 53738 28226414 ~ 28228301 (-) False G31759
TU46922 lncRNA upstream 67408 28387241 ~ 28387769 (-) True G31777
TU46935 lncRNA upstream 81872 28401705 ~ 28405804 (-) False G31786
TU46934 lncRNA upstream 83238 28403071 ~ 28405804 (-) True G31786
TU46962 lncRNA upstream 202721 28522554 ~ 28526332 (-) True G31804
TU46954 lncRNA upstream 203805 28523638 ~ 28541749 (-) True G31798
XM_043237532.1 mRNA downstream 68992 28212246 ~ 28213047 (-) True LOC122343218
XM_043236295.1 mRNA downstream 94782 28181566 ~ 28187257 (-) False LOC122342472
XM_043236294.1 mRNA downstream 94782 28181567 ~ 28187257 (-) True LOC122342472
XM_043236297.1 mRNA downstream 104453 28171251 ~ 28177586 (-) True LOC122342473
XM_043236293.1 mRNA downstream 151659 28120247 ~ 28130380 (-) True LOC122342471
XM_043236728.1 mRNA upstream 48622 28368455 ~ 28382557 (-) False pkma
XM_043236727.1 mRNA upstream 48622 28368455 ~ 28380614 (-) True pkma
XM_043236726.1 mRNA upstream 48622 28368455 ~ 28380614 (-) False pkma
XM_043236155.1 mRNA upstream 634515 28954348 ~ 28956291 (-) True LOC122342383
TU46883 other downstream 95261 28185330 ~ 28186778 (-) False LOC122342472
TU46793 other downstream 214277 28065297 ~ 28067762 (-) True eif1
TU46518 other downstream 637307 27642692 ~ 27644732 (-) True G31508
TU46508 other downstream 666098 27539355 ~ 27615941 (-) True G31503
TU46919 other upstream 44192 28364025 ~ 28365196 (-) True G31776
TU47051 other upstream 524360 28844193 ~ 28846421 (-) True G31868
TU47079 other upstream 653520 28973353 ~ 29012765 (-) True G31890

Expression Profile