RNA id: TU46847


Basic Information

Item Value
RNA id TU46847
length 431
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G31737
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 28095894 ~ 28096491 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGCAGTTTGTGCACAGTTTGTGTGCAGTTTATTGGTTTTTCATCACTCATGAGGTAGGATGAGGTAGGATGTTTCATCCCATCCTGAGTTAGGATGTTTTTGACACAGTTTGGCTTGTAGACTGGGAGGAGGAGCTGACCACTTTGCCATCCACCACCTCTTCCACAATGGTTACCACTTTGCGTGTAGTCGAGGATGAGCTTGAGCTTGAGCTTGAGACACTGCAGAGAAGTCTTCTGTACTCTGCAATCTCCAACTCCAGTCTGGTCTTGATGTCCAGAAGCATCCTGTACTCTTGTCCTTGGCGCTCCAGATCGGCACGGAGCTGCACCAGCTGCTCTTCCAGGCTGGTCACCTGGAACTGGAAACCGGTCAACATGGAGGCATAACGGGCCTGGGTGTCTGCCAAAGTGCCTTCCAGGGACGCTTT

Function

GO:

id name namespace
GO:0006030 chitin metabolic process biological_process
GO:0006032 chitin catabolic process biological_process
GO:0046348 amino sugar catabolic process biological_process
GO:1901072 glucosamine-containing compound catabolic process biological_process
GO:0006026 aminoglycan catabolic process biological_process

KEGG:

id description
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46844 lncRNA downstream 15513 28080175 ~ 28080381 (-) True G31736
TU46834 lncRNA downstream 153090 27941679 ~ 27942804 (-) True G31728
TU46829 lncRNA downstream 172718 27920620 ~ 27923176 (-) True G31723
TU46821 lncRNA downstream 191211 27898767 ~ 27904683 (-) True G31718
TU46788 lncRNA downstream 275641 27820024 ~ 27820253 (-) True G31692
TU46868 lncRNA upstream 23759 28120250 ~ 28121160 (-) False LOC122342471
XR_006250577.1 lncRNA upstream 30723 28127214 ~ 28129808 (-) True LOC122342474
TU46888 lncRNA upstream 129923 28226414 ~ 28228301 (-) True G31759
TU46889 lncRNA upstream 129923 28226414 ~ 28228301 (-) False G31759
TU46891 lncRNA upstream 129923 28226414 ~ 28228301 (-) False G31759
XM_043237797.1 mRNA downstream 28143 28065567 ~ 28067751 (-) False eif1
XM_043237153.1 mRNA downstream 58194 27981070 ~ 28037700 (-) False jupb
XM_043237154.1 mRNA downstream 58194 27981070 ~ 28037700 (-) True jupb
XM_043237704.1 mRNA downstream 118719 27969910 ~ 27977175 (-) True wipf2b
XM_043237698.1 mRNA downstream 126574 27966309 ~ 27969320 (-) True LOC122343310
XM_043236290.1 mRNA upstream 17011 28113502 ~ 28118332 (-) False LOC122342469
XM_043236291.1 mRNA upstream 17011 28113502 ~ 28118332 (-) False LOC122342469
XM_043236288.1 mRNA upstream 17011 28113502 ~ 28118332 (-) True LOC122342469
XM_043236289.1 mRNA upstream 17011 28113502 ~ 28117620 (-) False LOC122342469
XM_043236292.1 mRNA upstream 17011 28113502 ~ 28117589 (-) False LOC122342469
TU46793 other downstream 28132 28065297 ~ 28067762 (-) True eif1
TU46518 other downstream 451162 27642692 ~ 27644732 (-) True G31508
TU46508 other downstream 479953 27539355 ~ 27615941 (-) True G31503
TU46510 other downstream 543301 27539355 ~ 27552593 (-) False G31503
TU46464 other downstream 709476 27385805 ~ 27386418 (-) False LOC122342454
TU46883 other upstream 88839 28185330 ~ 28186778 (-) False LOC122342472
TU46919 other upstream 267534 28364025 ~ 28365196 (-) True G31776
TU47051 other upstream 747702 28844193 ~ 28846421 (-) True G31868
TU47079 other upstream 876862 28973353 ~ 29012765 (-) True G31890

Expression Profile