RNA id: XM_043236293.1


Basic Information

Item Value
RNA id XM_043236293.1
length 5007
RNA type mRNA
GC content 0.42
exon number 4
gene id LOC122342471
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 28120247 ~ 28130380 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGGTCGTCCGAGGGAAGATCGCGAATGCGCTCGTGGACTATTTTGATTTCCCAGTGCGTCTTCACGAGGTACAGTACGGTACCGCACACCGAGGGGCGTACACATCCACGATGCGCTTCGCGAGAAAGGGGCAACTTCGTTTCTAGTCAGTTGTGCTGGGGGTACTTCTGTGTATTTAACGCTATTTTTGGGAGGTGGGAAGAGGAAGAATGAAAGAGGTCTCCCAACGGATCGGTCGTAAACATGAACGGTGCCCTGTACATTTCGTTTTTCCAAGGTCAGCTGGAGTCCGCGCTGGAGCAGGTAGTGCAGCTCGCCGTTCAGGAAATCACCAAGACAGTCGGGGCCACTCTGAATTCAATGCTGTTGGAAACGGCCACCAAAGAGCAGGAAAACCAGCGCTTAAGGGCGACCCTTCAGTCTCGTGGAGGCAACGGGAAAAGCAATGCGTCTAAGGGGAAAACGGACGCGAACAATGAAACAAAGCAACACACCCCCAGTCAAAACCCTGAATGTGGCGCTCGGTCCGAAACGCTCAGGCGCGAGCAGAAAGCTCGAGCAGTCGGTCAGTTAAAATCCGTTATGGAGCACGTGCTGGAGTTCGCCGTCTGTGAGCTGTCTAAAATCGTGGAAGACAGCTTTGACGACCTGCTCTCGGAGTTCACCAAGAAGGAGCGGGAAAACCAGATATTAAAAGAGCAGTTGCAGGACAAGAGCGCGGCGGAGGACGGTAGTGTGCTTGCTGTGGAAACGGAAGAGCGCCACTGTGAGTCTGTCTCTCCTAGCAGCTCCAAAGCGGAGAAGCAAGAGTCGAAAGGCGTGCAGGACCAAACGCacaaaaaagagagggaaaaggaaaaaaatgaaaccacAAATGAACCAGATAAGCAGACTGTCATTGCAGTGGCTCAGGACTGGGTGCCCATCCTGGACAAAGTCTTTGGGCAGAAGTGGTGCAGTGACCTCTGGCAGATCAAAGAGGTCACCAGCAGTAAAGAGGAGCGCACCGGGCTGAGCTCGGGCTCGGTGACCGACATGGACAGCTTAATTCGAGAGACGCTCATGCCGTCTTGCCTGGCCACTCAGAGGAAGCTGGAGCTCGAGGTGGGCCAGCCGCCCTGGTTGCCACTCGACGATATGGAGGTGGTTTCTCTCACCTCTGAGGCTCAAAGCGTTCCTGTTATCAGCTCCTCAGGTGACGACTCTCAAATCAGATCCCCTTCTATGTTGCAAAGACTCCTGACACTTCCTTCGCAGCTTCTCGAGGATGACGATGAGTCCATGGATGCCGTTCCCAGCGTGGAAGTGTCCACAGAACCGGGTGATTCGCAGCCCGGTAAGGGCTCAAAGAGTGAGCAGATGAATAAGaaaaaggaagaggaggatgacgAAGAGGAGGATGACGAAGATGACGACGAGTCGGCGGACAGGACGGAGTCCTTGAAACACAAAGGTAGGAGAAAATCCCATGCTTGCAAAGAGTGCGGCAGGAAGTTCAGTCGAGCACATCTTCTCAGAGCCCACCGacaaacacacgaggagacgcCCAACAGATGCCCAcaatgtggaaagagtttctcCCAGCCTTCAAGGCTCCAGGCTCACTTacggacacacacagacaaaacaatATAAGAGTGTGTAGATGAAAGAAACTCAAGAGGCTTTCCAGTAATAATTGCTTCTCGAAGCGAGTCAGACTTTCAAATCCATTTCAAGTACTGGTGAAGGAAATGCAAGAAACGTgtagccttttttttctttttgaaggtACAGTGAGGTAAACGGATTAGTCATCAGACACAATTTGAGATGTCTTTACCTCCATTACGTTTTCCTAATTTTAAGGATTATTGGAAGCGTGTGTAGATATCAAAGTAGGATATGTACAGACCATGAAAATAAGGATCGAAGAATTTCATTTTTCCATTGGGTGTTTTTTCATAACACAAGTTTTAAAACATCCTAagactttgtaaatatttgagaCGTGTTACAGGAAGTCACTAGTTAATAGGTCCCATGCAGCATGCTGgtcttgtttctttttacaACCTTTTTGAATGTGATCAAACGAACCAGAGAGTGTAACACGTCTCCTGCGATCAAATGGACCGGTTTTTCATATGTCCTTACTGACTTAGTACTCAACATGAAATACCTCTTGTGTTTAGATGTCATACTGgatttttatatgattaaagTCTCGACTTTCACGTCAGATTCTAGACGTTTTCTTCAACCTTTCGCCATGGATTGAGGATGTCAGTTTTCGACTTGAACTTGCACATCTGTCATCGACTGCATGACGTGCACAACCAAGGATCTCTTCAAGGAGGATGAGATGAGAAGAAAATTGCATTGAAATGGTTCCCGAAAAGAAACTTGAAGCTCCTAAATCTTCATATTCTCATTTCAGTGACTTTAAAAGAGGATCTGACTTTACTAGTATCCTCAACTAGAGTAGCGTCTTCCTGTACTGTTCGGCTGTGGCTCGATTCTTGAACTGGAAGATTTGTTTTTTCCAGCAACGGtggcatgtatgtgtatacagaGTCTTCCTTAGGGAAGCCGTTATCTACCATTTCCAGAGAGGCAGACGGATTCTGCACTTACAATTTTTGCCCTATATCGAGGAGATGTAGGTCCCACCTGTTACGCACATTCCCACTCTCAGCCCTGAAGTTTTACAATATCTCTGTCGGTAATGAGCATGATGGGAGAGGGGGAAGTACAAGGTGTTACTGTTACTGCTCGGATCAATACCTCATCGATGGGACCATATCTTTCGGGACTTCTGCAATATCAGGAGTTAAGGTcctgctcaaaaaaataaacaaaaaacgttTACAAATGAAACGGGACCGGCCAGTTGGCCTGCTTATTATTTgattgtgcattaaaaatgtggCTTATTTTGCTTTCCGCTACTTAATACGTCCCTGTAGGAAGGTACCAAGAACTTGCGACCCAAAGATTACAATGAAGGGAAAACACTTTCGACCATACATATTCATTTGGATtgtattgccttttttttttttttttcttttacaatatgggccattacattttacattatgaaCCCTAAGCTTCTTTCAGATGTATTAAGTATCGTAACTTCATTTATAGAATATAATGAAGTACTTTATCTGTTTAGTGCCTAGATTTAAGCGTTTAATAAGCTGATATTGTAGGTTTTGGTGATAATTGAGAGGTAAATTCATTGTTTAGCACCCtgcctgttaaaaaaaaaagggaaaaaaacaaacaaaccagaacTACTATTTTCTTGTGCTTCGTGCTTTCTCCTTAACAGTCAGCTCTAGATATTGTACTAGTTCTTTAATTGTTACTTCCAGTCAGATCTgactttaatgttaaaataaatcgGTATGTTTAATCGATTCAGACTGGTTCACGGAAagagttagttcacccaaaaatatctTTCAGGTTTAGTCATGCAGGTTTGAGGTTgaactaataaataaagactctttatagttcatccaaaaatacaaCTGTAACCATGTGCTTTGATAAATATCGGTAACCAAACAGTCGCTGGTAGTTATTAACCTCCATAGCGTGGAGAGCTATTCTTTGCTTCAACagaacatgagggtgaataaatgaggacagaattgtcatttttgggtgaagacTCAAGCTAATTGCAGCTTGTGGATCCAAAAGACTAAAGAGGAACTGATATGAGTAAGAGTGACAATGTTATGGTATGTTTCCATTTGTTCTGGGTTacaaaaagcaatttaaatgaatattgaaGGACTTGAATTTTGCATCCGACTTAATGCAATGAAATGGCGCCATATACGCCCATCCATTTAGGACCACGAATTAAAGAATCTTAGCATGTAAAATCGCTTTGGGCCGCAGATATTTATTCAGTACTGGCGAATATATGATGCAGTCTCTTGTAAAAAAACCGACTCTGTGGGGTATGTTTGTTTGCAGTGACTTCCCTGGAAGTGCTTCATGGTGACTCCATTGACCGGCATCAATACCCTACgcctgttattttatttattttcagtaactcttttttttttttttttttttaaccaaaatgaaTAGCGTCTTTCTGCCAAACTGTCTGACACGTGAGCTTTGCGATGCAGTCCAGCATTCGCCCAGAATACTGCATTCTTCTAATGAACTACTTGAGCattttggtgttttgttttgttttatgttatgcATGATAACTCCTTTTTAgtggttttgttcattttcaagaACCTGTATTGTCATGTATTGAAAAAGAACACTTGTTGTTGTAACAGACCAATTGGATCGAATCTTTTCCATGGATCATGGTAAGCGGTTTACTGTTTTATGGCATAGTAGCTATGTATATTTACCATATACATAGTAAATGGATTATAGAGTTCAGCATTTGACCAATAAATGCAAAGTATTACTTTTGtaccattttctttttactccaGTATGAATTTTGCACTGTTTTTCTGTTACTCCACACATCCATACCTCAGTTTTGTTGGTAGTCTGAAAGCATTGCTCGGTTCATTACCTCAGGACTCATTCACATTAAGCGTATTTATGGCAAAAGTAGATAAACACGAGAGCTTTTaccttttattaatgttttttttttttggtggactATCTCTAAATTGGGAGAAATAAACAAGTCGCAGGGTagtttaatgaaaacattctatttaaatcaatgttgttattttacaataaaagccCGTTATGAACCACATATAGAGAACATCTATACTAAATTTGCACAAAATTTGGTCTACGCTcgaaaatcattattattattattatattatcatgaTTGAGAAGTCATCTTTTAGGAATTCCTGTTGTTGTAACCAGCATTTAATTTCTACTTCTTTTCCAAAAAGTTTTACCTATCactgaaatgtctttttaatgtGACTGGAAGTAGTTGTACATTTTGAATTAtggcaatatattaaaaaggtgAAATATTGCATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46847 lncRNA downstream 23756 28095894 ~ 28096491 (-) True G31737
TU46844 lncRNA downstream 39866 28080175 ~ 28080381 (-) True G31736
TU46834 lncRNA downstream 177443 27941679 ~ 27942804 (-) True G31728
TU46829 lncRNA downstream 197071 27920620 ~ 27923176 (-) True G31723
TU46821 lncRNA downstream 215564 27898767 ~ 27904683 (-) True G31718
TU46888 lncRNA upstream 96034 28226414 ~ 28228301 (-) True G31759
TU46889 lncRNA upstream 96034 28226414 ~ 28228301 (-) False G31759
TU46891 lncRNA upstream 96034 28226414 ~ 28228301 (-) False G31759
TU46898 lncRNA upstream 96034 28226414 ~ 28228301 (-) False G31759
TU46905 lncRNA upstream 114610 28244990 ~ 28250107 (-) True G31765
XM_043236290.1 mRNA downstream 1915 28113502 ~ 28118332 (-) False LOC122342469
XM_043236291.1 mRNA downstream 1915 28113502 ~ 28118332 (-) False LOC122342469
XM_043236288.1 mRNA downstream 1915 28113502 ~ 28118332 (-) True LOC122342469
XM_043236289.1 mRNA downstream 2627 28113502 ~ 28117620 (-) False LOC122342469
XM_043236292.1 mRNA downstream 2658 28113502 ~ 28117589 (-) False LOC122342469
XM_043236297.1 mRNA upstream 40871 28171251 ~ 28177586 (-) True LOC122342473
XM_043236295.1 mRNA upstream 51186 28181566 ~ 28187257 (-) False LOC122342472
XM_043236294.1 mRNA upstream 51187 28181567 ~ 28187257 (-) True LOC122342472
XM_043237532.1 mRNA upstream 81866 28212246 ~ 28213047 (-) True LOC122343218
XM_043236728.1 mRNA upstream 238075 28368455 ~ 28382557 (-) False pkma
TU46793 other downstream 52485 28065297 ~ 28067762 (-) True eif1
TU46518 other downstream 475515 27642692 ~ 27644732 (-) True G31508
TU46508 other downstream 504306 27539355 ~ 27615941 (-) True G31503
TU46510 other downstream 567654 27539355 ~ 27552593 (-) False G31503
TU46464 other downstream 733829 27385805 ~ 27386418 (-) False LOC122342454
TU46883 other upstream 54950 28185330 ~ 28186778 (-) False LOC122342472
TU46919 other upstream 233645 28364025 ~ 28365196 (-) True G31776
TU47051 other upstream 713813 28844193 ~ 28846421 (-) True G31868
TU47079 other upstream 842973 28973353 ~ 29012765 (-) True G31890

Expression Profile