RNA id: TU46888


Basic Information

Item Value
RNA id TU46888
length 1804
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G31759
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 28226414 ~ 28228301 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTCAATTCAACTTTATTTCATAATGTAAAACAGTGAGAAAAACAATcacaatatacaaaaaagaTAGGTCACAGAATGTGATTGGCTGTTTTACCCGCTCTGGTAAGGCACGTCTTTATCTGTAAACAACATTCATTACACACCAAGaaacagaaatcaaataaaacacacagagtTCATAGAGATCATAACACGGCACAGTTATAGTCAGATTCTCGTCTAAAAAGCATCTTACCATTAGGATAAAAACAGGAGAATAACTTTAtgatattaacatttttcatttgtttgtagtTATATATTATGTGATGCTTCTTTCTGAAAACATACTGACATCTAGTGCTTAGAATCGGTCTTTACACAAACGATGTTAAAACGCAACAtagtaaacaatatttttaagtgATTGTTTGCATtcgatgtttaaaatgttgtaatgtaaaatgaaacAGATTTATACCCATCATGCACtgtctgatatatatatatatatatattcacttcaAACACTAGAATGAAAAGACATAAACGAATCCCGGATTCTGGTAAACAGATGAAAACACTGGAAAGCACCTCATCATCCGGAGACACGGGTCCCTTAACCCTGTAACCCTTAACCTTTAATCCCAGAAACGTTTGGTCAAGATAATGGCAAATATTTCGACGTCCAGCGTAAACAGAAGAAGCCCTTTCCCCTCCGTTTCGGAATGAAACGataaacaaaatctaaaactgAATTCATAACTACATCTTTGAAGAATAGATAGTGGTATTAGATATATGCATATAGTGCATGTTAATTTATATACTGACATAAATGCATGCCCTTCAATATATgttcatttgtatatatatatatatatatatatatatatatatatatatatatatttatagtagaaaattacatttaaagggacagttcacccagaaatgacatttctgtgatcatttattcacctgatctaaacctgtatgaatttcttttagattatgttttgaagaaagttggtaaccaaacagctgacggtacccattgacttccGTGGGTCAACAACAATCTTAAACATTTCTGGGTGAGTGAACGATCGCAGGACTTTTTTCAGGCCGAACTGTCTTGTAAACGAGTGAATTCACTTCAGAGAGACATTCCCAAACGACTCCAGAGATAAAGATGAAGAGCAGGGCTGGGACAGTGAATCAATGCGTCGCGACTCGAACAACTGATCTGCACGCGTTAGAAAGAGCACACAGGAACCTGAGAATACAATAATCATTCGGTTTAAAAAGTTCCAATTATCTCTGAATCGATTCACAAATTGCGATGCATTCCAATATTCCAAGAATCGATTCACGAATCgcgatgcatttttaaataatctcgGAATCGATTCACGAATCgcgatgcatttttaaataatctcgGAATCGATTCACGAATCgcgatgcatttttaaataatctcgGAATCGATTCACGAATCgcgatgcattttttaaataatctaggAATCGATTCACGAATCgcgatgcatttttaaataaatctaggAATCGATTCACGAATCgctatgcatttttaaataaatctaggAATCGATTCACGAATCgcgatgcatttttaaataatctcgGAATCGATTCACGAATCgcgatgcattttttaaataatctaggAATCGATTCACGAATCgcgatgcattttttaaataatctaggAATCGATTCACGAATCgcgatgcatttttaataaatctctgAATCGATTCACAAATCGCGATGCATCAATTCTTTGTCCCGGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250577.1 lncRNA downstream 96606 28127214 ~ 28129808 (-) True LOC122342474
TU46868 lncRNA downstream 105254 28120250 ~ 28121160 (-) False LOC122342471
TU46847 lncRNA downstream 129923 28095894 ~ 28096491 (-) True G31737
TU46844 lncRNA downstream 146033 28080175 ~ 28080381 (-) True G31736
TU46834 lncRNA downstream 283610 27941679 ~ 27942804 (-) True G31728
TU46905 lncRNA upstream 16689 28244990 ~ 28250107 (-) True G31765
TU46812 lncRNA upstream 53738 28282039 ~ 28319833 (-) True LOC122343220
XR_006250730.1 lncRNA upstream 90477 28318778 ~ 28319556 (-) False LOC122343220
TU46922 lncRNA upstream 158940 28387241 ~ 28387769 (-) True G31777
TU46935 lncRNA upstream 173404 28401705 ~ 28405804 (-) False G31786
XM_043237532.1 mRNA downstream 13367 28212246 ~ 28213047 (-) True LOC122343218
XM_043236295.1 mRNA downstream 39157 28181566 ~ 28187257 (-) False LOC122342472
XM_043236294.1 mRNA downstream 39157 28181567 ~ 28187257 (-) True LOC122342472
XM_043236297.1 mRNA downstream 48828 28171251 ~ 28177586 (-) True LOC122342473
XM_043236293.1 mRNA downstream 96034 28120247 ~ 28130380 (-) True LOC122342471
XM_043236728.1 mRNA upstream 140154 28368455 ~ 28382557 (-) False pkma
XM_043236727.1 mRNA upstream 140154 28368455 ~ 28380614 (-) True pkma
XM_043236726.1 mRNA upstream 140154 28368455 ~ 28380614 (-) False pkma
XM_043236155.1 mRNA upstream 726047 28954348 ~ 28956291 (-) True LOC122342383
TU46883 other downstream 39636 28185330 ~ 28186778 (-) False LOC122342472
TU46793 other downstream 158652 28065297 ~ 28067762 (-) True eif1
TU46518 other downstream 581682 27642692 ~ 27644732 (-) True G31508
TU46508 other downstream 610473 27539355 ~ 27615941 (-) True G31503
TU46510 other downstream 673821 27539355 ~ 27552593 (-) False G31503
TU46919 other upstream 135724 28364025 ~ 28365196 (-) True G31776
TU47051 other upstream 615892 28844193 ~ 28846421 (-) True G31868
TU47079 other upstream 745052 28973353 ~ 29012765 (-) True G31890

Expression Profile