RNA id: TU46934


Basic Information

Item Value
RNA id TU46934
length 2650
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G31786
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 28401705 ~ 28405804 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtgtgtgtgtgcgtgcgccatttttttgtcttgttttctagattaaaaaaaattatttattgagatgcaattacttaaaaaatgagtaaataataagtattattttcagaaaaactgATCAAAATTAAGCCACATTAtgcttaaagaaataaaaaaaaacatcttgtattccctttaaatactttttgatATTTCTTACCTAtcctatattatttatttacatttttacaattgcatttttcagaaaacaagacttaatatCTTCACTGGTGTACgatgtaaatatttattgatgcctcaggtttttttataaatgtaaatgatttaatgtttaGCTATTAGAGCAGATTAGACTTAAAAGGAGGAGGAGGTaagaaaatgaaacactaaaaaCTAGTCCTTCTCGAATCTGCTTCTGAAGTAATGATGCATTAAGGATACTTTTAGCCAAAACGAGacaaaatactgatttaaaaaaagacgtggtacaagaaaaacaacacataCAACAAGCAATAAAATCACAGATTCAGAAAAGAGTGTCCACGCACGACAAAGCAACACTGATATGCTCAGAAAACAGACTGAGGTGTTTgttagagagagacagacgcgATGAAGCTCGGAGGACGCCGGACCGGATCCTACCTGAGTATCCAAAGGAAATACTGGATATGGGGCTCAGATAGATGCCCTTCCCGTACGCTGCTCCATGCAGCTTTgatgaaagagaagaagaggaggagagagttACACGCTCTGCACACGAAGAGAAACACGCCTGAGCCCTGGGACGAAGGCTGCTGGGACACCTTCAGTCAACCGTGAGATGGAGGAAAGCACGAGGAAACAACCGGTGAAGAAGAcgggtggtgatgatgatgatgatgatgatgatgatcatgaTGGTGGTTTCCATCGAAGATGCATGAGCATGCGTTACGCAGCGTAATGAATGTTCGGTCTCGTGAGAGTTTACAGCAGTGTGACTAAAGCAAACGACGGAGGTCTTTCCAGGAGAAAAGCACCGGACGACATGGAGGTGAGCGACAGGGAGCTGAAGAGGGAAACAGATCATTCCAGCGGGAGCGTGAGGGTGGTGAGAACAAACTGAGCTTATTTGAACCGCTCTCAATGCCACGCAGCGTCCATTTCCAGTGTGACGAACGAACCAGAAGTAAATCCGCCTCGATTTTCTAACAACGTCATACGTTTTCACactgagctgcattaaaactataaataaatacttatttccAACGCCACTTGCTGCACTTCAACAAAAAATCATGTTCTTTTTCggtatctttgttttgtttttctacgCAAATACGTAAGCGTTATTAAAATCGAgattcaaaataacattaaaaagacaagtctcgtttttcaaaaaacatataaaaataaaaaactcacTGACTGatatttttccttattttaaacgcaagttgctttatttttatctaattCTGGGAATGCAATCATTCTTATTTTATGTCGTTTTACTTCCAAGTAAATTTCTCTTGATTTAAGGATGTTGAGATATTTGtgctggattaaaaaaaaaccaaaaaaacatgaaattctACACTAAACTGGATTAAAAACGCATGCTAATCATTTGTTTCAAAGATAAATAGCGGATGCCTCTCATGGAGCTGCAGTACAAAGAATCTTAAATCAAGCTGAAAAACGACAGCAGACGCTTAAAAAGGTCCTGTTTGCTGATCATCAAAAGTGACGAGAAAAAATATCTATCGGTccaaaaaataacacttttaaacCTAAATTAGGATTAATTAAGTTTCTCAAAAATCAAGCCTCGTTTTGAGTAAATGTGAGTTGgattgaaaacattttgatatttgtgCTGGAAAACGAGAGAAGCGCTGACTAAGGAAACACAGTGAAGATGAGagaatgagtgaatgagtgagtgagtgagagagagagagagagagagagagagagagagagagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgagcgtgcgtgagagagtgtgtgtgtgtgtgcacgtgtgcatgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgagagtgagtgagagagtgtgtgtgtgtgtgtgcgcgtgtgcatgcgcgtgtgcatgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgagtgtgagtgagtgataGAGTGTCTCTCAGTATATATCACAGTATAGTATAGAATAGTGTTGTCTGCAGTCAGAAAAGCCCTGATTCCAGACATAAAGGCAGATTGAAGGAGTCGGGCATCCGCTACGAGTCGTCCAATGAGGATGCGTGTCTGAGGTCAGCTGACTGATGTCTTTCACGTACCTGCAGTTTAGTGTAGGAGGCATTGACCAGTCCATTCCTCAGAACCGAGTGCCAGTTCTCGATATGGGAGCCACTAGAGAGAAGCAAGCGATGAAAAACAAGAGAAAGGATGCTTACAGCGCTTCTGGCATCATTCAGCTTTATAAGTGTGAAAGCAATCTGACGGCCTGTACGtgataaagtttatttttaaacttaacaCAGACGTCTGGAGATGTTTCTGAGTTACGCCAGTCTTTTG

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0071944 cell periphery cellular_component

KEGG:

id description
ko04727 GABAergic synapse
ko04723 Retrograde endocannabinoid signaling
ko05032 Morphine addiction
ko05033 Nicotine addiction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46922 lncRNA downstream 15302 28387241 ~ 28387769 (-) True G31777
TU46812 lncRNA downstream 83238 28282039 ~ 28319833 (-) True LOC122343220
XR_006250730.1 lncRNA downstream 83515 28318778 ~ 28319556 (-) False LOC122343220
TU46905 lncRNA downstream 152964 28244990 ~ 28250107 (-) True G31765
TU46898 lncRNA downstream 174770 28226414 ~ 28228301 (-) False G31759
TU46962 lncRNA upstream 116750 28522554 ~ 28526332 (-) True G31804
TU46954 lncRNA upstream 117834 28523638 ~ 28541749 (-) True G31798
TU46966 lncRNA upstream 140671 28546475 ~ 28548926 (-) True G31808
TU46967 lncRNA upstream 140671 28546475 ~ 28548926 (-) False G31808
TU46976 lncRNA upstream 241168 28646972 ~ 28652833 (-) True G31816
XM_043236728.1 mRNA downstream 20514 28368455 ~ 28382557 (-) False pkma
XM_043236727.1 mRNA downstream 22457 28368455 ~ 28380614 (-) True pkma
XM_043236726.1 mRNA downstream 22457 28368455 ~ 28380614 (-) False pkma
XM_043237532.1 mRNA downstream 190024 28212246 ~ 28213047 (-) True LOC122343218
XM_043236295.1 mRNA downstream 215814 28181566 ~ 28187257 (-) False LOC122342472
XM_043236155.1 mRNA upstream 548544 28954348 ~ 28956291 (-) True LOC122342383
TU46919 other downstream 37875 28364025 ~ 28365196 (-) True G31776
TU46883 other downstream 216293 28185330 ~ 28186778 (-) False LOC122342472
TU46793 other downstream 335309 28065297 ~ 28067762 (-) True eif1
TU46518 other downstream 758339 27642692 ~ 27644732 (-) True G31508
TU46510 other downstream 850478 27539355 ~ 27552593 (-) False G31503
TU47051 other upstream 438389 28844193 ~ 28846421 (-) True G31868
TU47079 other upstream 567549 28973353 ~ 29012765 (-) True G31890

Expression Profile