RNA id: TU46935


Basic Information

Item Value
RNA id TU46935
length 2071
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G31786
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 28401705 ~ 28405804 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtgtgtgtgtgcgtgcgccatttttttgtcttgttttctagattaaaaaaaattatttattgagatgcaattacttaaaaaatgagtaaataataagtattattttcagaaaaactgATCAAAATTAAGCCACATTAtgcttaaagaaataaaaaaaaacatcttgtattccctttaaatactttttgatATTTCTTACCTAtcctatattatttatttacatttttacaattgcatttttcagaaaacaagacttaatatCTTCACTGGTGTACgatgtaaatatttattgatgcctcaggtttttttataaatgtaaatgatttaatgtttaGCTATTAGAGCAGATTAGACTTAAAAGGAGGAGGAGGTaagaaaatgaaacactaaaaaCTAGTCCTTCTCGAATCTGCTTCTGAAGTAATGATGCATTAAGGATACTTTTAGCCAAAACGAGacaaaatactgatttaaaaaaagacgtggtacaagaaaaacaacacataCAACAAGCAATAAAATCACAGATTCAGAAAAGAGTGTCCACGCACGACAAAGCAACACTGATATGCTCAGAAAACAGACTGAGGTGTTTgttagagagagacagacgcgATGAAGCTCGGAGGACGCCGGACCGGATCCTACCTGAGTATCCAAAGGAAATACTGGATATGGGGCTCAGATAGATGCCCTTCCCGTACGCTGCTCCATGCAGCTTTgatgaaagagaagaagaggaggagagagttACACGCTCTGCACACGAAGAGAAACACGCCTGAGCCCTGGGACGAAGGCTGCTGGGACACCTTCAGTCAACCGTGAGATGGAGGAAAGCACGAGGAAACAACCGGTGAAGAAGAcgggtggtgatgatgatgatgatgatgatgatgatcatgaTGGTGGTTTCCATCGAAGATGCATGAGCATGCGTTACGCAGCGTAATGAATGTTCGGTCTCGTGAGAGTTTACAGCAGTGTGACTAAAGCAAACGACGGAGGTCTTTCCAGGAGAAAAGCACCGGACGACATGGAGGTGAGCGACAGGGAGCTGAAGAGGGAAACAGATCATTCCAGCGGGAGCGTGAGGGTGGTGAGAACAAACTGAGCTTATTTGAACCGCTCTCAATGCCACGCAGCGTCCATTTCCAGTGTGACGAACGAACCAGAAGTAAATCCGCCTCGATTTTCTAACAACGTCATACGTTTTCACactgagctgcattaaaactataaataaatacttatttccAACGCCACTTGCTGCACTTCAACAAAAAATCATGTTCTTTTTCggtatctttgttttgtttttctacgCAAATACGTAAGCGTTATTAAAATCGAgattcaaaataacattaaaaagacaagtctcgtttttcaaaaaacatataaaaataaaaaactcacTGACTGatatttttccttattttaaacgcaagttgctttatttttatctaattCTGGGAATGCAATCATTCTTATTTTATGTCGTTTTACTTCCAAGTAAATTTCTCTTGATTTAAGGATGTTGAGATATTTGtgctggattaaaaaaaaaccaaaaaaacatgaaattctACACTAAACTGGATTAAAAACGCATGCTAATCATTTGTTTCAAAGATAAATAGCGGATGCCTCTCATGGAGCTGCAGTACAAAGAATCTTAAATCAAGCTGAAAAACGACAGCAGACGCTTAAAAAGGTCCTGTTTGCTGATCATCAAAAGTGACGAGAAAAAATATCTATCGGTccaaaaaataacacttttaaacCTAAATTAGGATTAATTAAGTTTCTCAAAAATCAAGCCTCGTTTTGAGTAAATGTGAGTTGgattgaaaacattttgatatttgtgCTGGAAAACGAGAGAAGCGCTGACTAAGGAAACACAGTGAAGATGAGagaatgagtgaatgagtgagtgagtgagagagagagagagagagagagagagagagtgagagtgtgtgtgtgtgtgtgcattagtGTAAAAGAGTGTGTAaaagtgcatgcatgtgtgtgtccatgtgtccttgtgagtgtgtgagggAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46922 lncRNA downstream 13936 28387241 ~ 28387769 (-) True G31777
TU46812 lncRNA downstream 81872 28282039 ~ 28319833 (-) True LOC122343220
XR_006250730.1 lncRNA downstream 82149 28318778 ~ 28319556 (-) False LOC122343220
TU46905 lncRNA downstream 151598 28244990 ~ 28250107 (-) True G31765
TU46889 lncRNA downstream 173404 28226414 ~ 28228301 (-) False G31759
TU46962 lncRNA upstream 116750 28522554 ~ 28526332 (-) True G31804
TU46954 lncRNA upstream 117834 28523638 ~ 28541749 (-) True G31798
TU46966 lncRNA upstream 140671 28546475 ~ 28548926 (-) True G31808
TU46967 lncRNA upstream 140671 28546475 ~ 28548926 (-) False G31808
TU46976 lncRNA upstream 241168 28646972 ~ 28652833 (-) True G31816
XM_043236728.1 mRNA downstream 19148 28368455 ~ 28382557 (-) False pkma
XM_043236727.1 mRNA downstream 21091 28368455 ~ 28380614 (-) True pkma
XM_043236726.1 mRNA downstream 21091 28368455 ~ 28380614 (-) False pkma
XM_043237532.1 mRNA downstream 188658 28212246 ~ 28213047 (-) True LOC122343218
XM_043236295.1 mRNA downstream 214448 28181566 ~ 28187257 (-) False LOC122342472
XM_043236155.1 mRNA upstream 548544 28954348 ~ 28956291 (-) True LOC122342383
TU46919 other downstream 36509 28364025 ~ 28365196 (-) True G31776
TU46883 other downstream 214927 28185330 ~ 28186778 (-) False LOC122342472
TU46793 other downstream 333943 28065297 ~ 28067762 (-) True eif1
TU46518 other downstream 756973 27642692 ~ 27644732 (-) True G31508
TU46510 other downstream 849112 27539355 ~ 27552593 (-) False G31503
TU47051 other upstream 438389 28844193 ~ 28846421 (-) True G31868
TU47079 other upstream 567549 28973353 ~ 29012765 (-) True G31890

Expression Profile