RNA id: TU46954


Basic Information

Item Value
RNA id TU46954
length 795
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G31798
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 28523638 ~ 28541749 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ctcaataaatagacacacacacacacacacacacacacacacatatattatataatataccaaaacctttatttttgatgcaatgaatcatttaacTTAAACTAGAAAGCCAGACGGAAACGCTAAGTAAGAAAAGGATTGGTGCGAGCGATGCGGTCCGTTGAGTCCGGCCGGATCCCGAGCCTCTTGTGGTTCATTTGGCAGTTTCAGTAGCTGTCGTCCTCCTCCGAGTCGTCCCGCTAAAGTCTCTCTGTGCGAGCGCAGGAAGCCCCGTCCGATGCTCAGTGGATTGTCGCCCGAACGCAAAGGCTTCTGGGATCCCGGATCCGCGATGGAATGGAGAAAGAGCGCGACACGTCTCCTGCACATCCGCCTTCCCTCTGTACAAGTTCAAGTATTATCTtcgctaataaaaataaatacaaaaaacatgaaaaatgagcGACTCTACTCCTATGTTCTACATTTCTAAACTACGTCGGTGCAAGAAGCGGCTCCCGGAGCAAAGGTTTGGTCGGGCCGCCGGACCTCCTACGTTCACGTTAGTATTCGTTATACTTGCAGCTACGAGGAAACGAGTTCTGgactctatatatatttatatcttttaaaaagCGTGTAGTCCTTTGGTCCCTATTTTCTAAGGAATGATGCATGTAGATATTCCTGGATTCTCGTCCAGAGCGCAGATACCAGTGTAGGCACGAAAACCAAAGATGGCagcaggctggtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46935 lncRNA downstream 117834 28401705 ~ 28405804 (-) False G31786
TU46934 lncRNA downstream 117834 28403071 ~ 28405804 (-) True G31786
TU46922 lncRNA downstream 135869 28387241 ~ 28387769 (-) True G31777
TU46812 lncRNA downstream 203805 28282039 ~ 28319833 (-) True LOC122343220
TU46966 lncRNA upstream 4726 28546475 ~ 28548926 (-) True G31808
TU46967 lncRNA upstream 4726 28546475 ~ 28548926 (-) False G31808
TU46976 lncRNA upstream 105223 28646972 ~ 28652833 (-) True G31816
TU46974 lncRNA upstream 116621 28658370 ~ 28664428 (-) True G31815
TU47048 lncRNA upstream 298214 28839963 ~ 29039521 (-) True G31865
XM_043236728.1 mRNA downstream 141081 28368455 ~ 28382557 (-) False pkma
XM_043236727.1 mRNA downstream 143024 28368455 ~ 28380614 (-) True pkma
XM_043236726.1 mRNA downstream 143024 28368455 ~ 28380614 (-) False pkma
XM_043237532.1 mRNA downstream 310591 28212246 ~ 28213047 (-) True LOC122343218
XM_043236295.1 mRNA downstream 336381 28181566 ~ 28187257 (-) False LOC122342472
XM_043236155.1 mRNA upstream 412599 28954348 ~ 28956291 (-) True LOC122342383
TU46919 other downstream 158442 28364025 ~ 28365196 (-) True G31776
TU46883 other downstream 336860 28185330 ~ 28186778 (-) False LOC122342472
TU46793 other downstream 455876 28065297 ~ 28067762 (-) True eif1
TU46518 other downstream 878906 27642692 ~ 27644732 (-) True G31508
TU46510 other downstream 971045 27539355 ~ 27552593 (-) False G31503
TU47051 other upstream 302444 28844193 ~ 28846421 (-) True G31868
TU47079 other upstream 431604 28973353 ~ 29012765 (-) True G31890

Expression Profile