RNA id: TU46991


Basic Information

Item Value
RNA id TU46991
length 1324
RNA type TUCP
GC content 0.40
exon number 4
gene id LOC122343276
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 28830635 ~ 28893627 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCAGATTATGTTTTACATGCGACGTTTACACTTGATCGTAAgaacttttcttcattttcaaaaactgatcattcatctttttatttgttcttgtgGGAAGATACATAAACTTCATGAGAAagcaaagacattttgagaagttgtctagaaactgaacgttttgatcaaagcaagtcttcagctgtggagcagaaagacacttccttattcatTCGTGAGTTGGTGAAGGACGATGGCGTCTGTTGAAAAGCTGCTCGTGGACTCACTGAAGGATCTGGTAGAAGCTGAACTGAAGGAGTTTCAGTGGAACTTAGTGAATTTACGTCTTGAGCATCTTTCAAGGTCTGAATTGGAAAAGGCAGATAGATTCGACACAGTGGACAAAATGGTCAAATGTTTTGGACCAGACGAAGCTGTGAAGGTCATGATAGACATCCTAAGAAAGATGAGCCAGAATAATCTGGCTGAATGGTTGGAGAATGAACACAAGCGAgCTCAGACTGAGGGCGATATGAAGACATCTGTAGGTAATTCACAACATATCTCAAagctgaaaaactttttaaaagtcacAAAGCAAACATGAAGAAGAACGTAGAATATATCATTGAGGGCAACATagaaaatgaagcaaaacttaaggctgtttacacagatctgttcatcacagaggAGATATGAAAGATGTCAATCACGAACATGAGATTCTGAAGATTGATGatgctttcaaaaacaaaaaaacacagggcaaaccaatcaaatgcaatgatatatttacCGAAGTGAGgaaaaacagtgagaaaaaaTTGTTCTCACTAAGGGCatcgctggcattggaaaaactgtctctgtgcacaagttcatcctggactgggcagaaggaaaagccaatcaagatatacactgtgtgttcctgcttccattcagagagatTAACTTAATGACAAATGAAGATTTCAGTCTCCATGAGCTTCTGCTGGAATTTTATCCTGAACTGAAGGACCTGGAGAAATCAAAGCTATATAAGGGATGTAAgatagcatttatatttgatggacttgatgagAGTCGCCTGTCtctaaattttaaaagtagatcACTGAACACTGTTGAGAAAAAAGCATCTGTGGATGTGCTCTTTACAAGTCTGGTCAAAGGGACTCTGCTTCCATCAGCTATTGTCTGGGTGACATCACGACccgcagcagccaatcagatccctccTCAGTATGTAGGATTGTTCACAGAGGTGCGAGGATTCACTGACCAACAGAAGGAGGAGTACTTCAGAAAGAGATTCACAGATGAGAGTCTGTcctccag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250780.1 lncRNA upstream 28638 28856131 ~ 28858515 (+) True LOC122343449
XR_006250740.1 lncRNA upstream 55855 28830635 ~ 28831298 (+) False LOC122343276
TU46760 lncRNA upstream 234320 28646977 ~ 28652833 (+) True G31665
XR_006250587.1 lncRNA upstream 293286 28568285 ~ 28593867 (+) True LOC122342517
TU46741 lncRNA upstream 364820 28521748 ~ 28522333 (+) False G31653
TU47023 lncRNA downstream 104101 28997728 ~ 29002977 (+) True G31845
TU47024 lncRNA downstream 110169 29003796 ~ 29023855 (+) True G31846
TU47027 lncRNA downstream 111655 29005282 ~ 29024602 (+) True G31847
TU47028 lncRNA downstream 113010 29006637 ~ 29025893 (+) True G31848
TU47007 lncRNA downstream 120918 29014545 ~ 29185529 (+) False LOC122342386
XM_043236154.1 mRNA upstream 292158 28593877 ~ 28594995 (+) True LOC122342381
XM_043237683.1 mRNA upstream 349821 28421249 ~ 28537332 (+) False celf6
XM_043237684.1 mRNA upstream 349821 28421249 ~ 28537332 (+) False celf6
XM_043237685.1 mRNA upstream 349822 28421249 ~ 28537331 (+) True celf6
XM_043237899.1 mRNA upstream 476843 28389086 ~ 28410310 (+) False LOC122343436
XM_043236156.1 mRNA downstream 76624 28970251 ~ 28993117 (+) True LOC122342385
XM_043236158.1 mRNA downstream 112138 29005765 ~ 29034527 (+) False LOC122342386
TU46732 other upstream 533927 28350353 ~ 28353226 (+) True G31649
TU46717 other upstream 566459 28285027 ~ 28320694 (+) False G31636

Expression Profile