RNA id: TU47027


Basic Information

Item Value
RNA id TU47027
length 367
lncRNA type sense_over
GC content 0.37
exon number 2
gene id G31847
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 29005282 ~ 29024602 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGACATGTCAAAGAGTCTTCTGCAGATTTACATCGGTCACAAATAGAAGAAATGGCAGGAAAAAAATTTGTGCAGTTctaattttgaataatgcagtttattttaaactgaattaattgATGTCTAGAATTGTTGAGCCCAACAATAGCGTATAAATCCTTCTTTCTTCCAGCAGAGATTCAAAATTAGATACTGCTGTAATGAGGACACGGaggctgtgtttggatccattTGCTGTAGTTTATTTAGGGCTGAGACAATAATCATAAACGTGAAGGTAGGCAGAAGGTCAGATCCAGTACATCAATCAATCCAGTAAACGATAGAGAAGGGCAAATCCAAATGTCGTAAAACAGGTAAACAGGC

Function

GO:

id name namespace
GO:0000041 transition metal ion transport biological_process
GO:0006826 iron ion transport biological_process

KEGG:

id description
ko04142 Lysosome
ko04216 Ferroptosis
ko04978 Mineral absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47023 lncRNA upstream 2305 28997728 ~ 29002977 (+) True G31845
XR_006250780.1 lncRNA upstream 146767 28856131 ~ 28858515 (+) True LOC122343449
XR_006250740.1 lncRNA upstream 173984 28830635 ~ 28831298 (+) False LOC122343276
TU46760 lncRNA upstream 352449 28646977 ~ 28652833 (+) True G31665
XR_006250587.1 lncRNA upstream 411415 28568285 ~ 28593867 (+) True LOC122342517
TU47005 lncRNA downstream 9653 29034255 ~ 29044792 (+) True LOC122342386
TU47003 lncRNA downstream 130831 29155433 ~ 29165907 (+) True LOC122343231
XR_006250732.1 lncRNA downstream 130837 29155439 ~ 29165699 (+) False LOC122343231
XR_006250731.1 lncRNA downstream 130837 29155439 ~ 29165699 (+) False LOC122343231
XM_043236156.1 mRNA upstream 12165 28970251 ~ 28993117 (+) True LOC122342385
XM_043236154.1 mRNA upstream 410287 28593877 ~ 28594995 (+) True LOC122342381
XM_043237683.1 mRNA upstream 467950 28421249 ~ 28537332 (+) False celf6
TU46990 other upstream 111655 28830640 ~ 28893627 (+) False LOC122343276
TU46989 other upstream 111655 28887153 ~ 28893627 (+) False LOC122343276
TU46991 other upstream 111655 28887153 ~ 28893627 (+) True LOC122343276
TU46732 other upstream 652056 28350353 ~ 28353226 (+) True G31649
TU46708 other upstream 702385 28302407 ~ 28302897 (+) False LOC122342379

Expression Profile