RNA id: TU47071


Basic Information

Item Value
RNA id TU47071
length 547
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G31883
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 28907502 ~ 28910158 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cttaaatgggtttaatccaaaacggcaaaataaatatatacaaaaggcaggcaggtggGTAGGTAGGtagaacagacaggcaggacAAAACTCACGTagggacattgacgatcggacaaacggaactgaaaacacaggacttaaatacacagggttaaatgactaaattaactacatacagctgatgacaatgacataattaacatggagggaaggcagggcacagggagcacatggcacaggacaaaaacaaacaaagagtccagagacgtgacaaaatgtatacacatataaatattttcaaaatatgtactgtatgtgtgaatgtgtatatatatatatatgtgtgtgaaatattaacaaaatgtttatgcaaGATTATAGAAAGAATGAATAATTCAGCTGTCTACTTAAGCCGTAACGTTGCAaaacttgcattatttatatgcttATTATTTCGGTAGGGAGACGTTCAAAACCTCTGTACAGAATGTTACAATTTCTCAGTCCTAATGACACACACATAAGGCTGCGAGGTGTTTCTGTG

Function

GO:

id name namespace
GO:0000041 transition metal ion transport biological_process
GO:0006826 iron ion transport biological_process

KEGG:

id description
ko04978 Mineral absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47050 lncRNA downstream 65063 28841910 ~ 28842439 (-) True G31867
TU46974 lncRNA downstream 243074 28658370 ~ 28664428 (-) True G31815
TU46976 lncRNA downstream 254669 28646972 ~ 28652833 (-) True G31816
TU46966 lncRNA downstream 358576 28546475 ~ 28548926 (-) True G31808
XR_006250629.1 lncRNA upstream 47084 28957242 ~ 28960302 (-) True LOC122342678
TU47076 lncRNA upstream 48365 28958523 ~ 28960254 (-) False LOC122342678
TU47099 lncRNA upstream 99779 29009937 ~ 29015013 (-) True G31910
TU47103 lncRNA upstream 102699 29012857 ~ 29113174 (-) True G31911
TU47102 lncRNA upstream 103282 29013440 ~ 29113174 (-) False G31911
XM_043236728.1 mRNA downstream 524945 28368455 ~ 28382557 (-) False pkma
XM_043236727.1 mRNA downstream 526888 28368455 ~ 28380614 (-) True pkma
XM_043236726.1 mRNA downstream 526888 28368455 ~ 28380614 (-) False pkma
XM_043237532.1 mRNA downstream 694455 28212246 ~ 28213047 (-) True LOC122343218
XM_043236295.1 mRNA downstream 720245 28181566 ~ 28187257 (-) False LOC122342472
XM_043236155.1 mRNA upstream 44190 28954348 ~ 28956291 (-) True LOC122342383
TU47051 other downstream 61081 28844193 ~ 28846421 (-) True G31868
TU46919 other downstream 542306 28364025 ~ 28365196 (-) True G31776
TU46883 other downstream 720724 28185330 ~ 28186778 (-) False LOC122342472
TU46793 other downstream 839740 28065297 ~ 28067762 (-) True eif1
TU46518 other downstream 1262770 27642692 ~ 27644732 (-) True G31508
TU47079 other upstream 63195 28973353 ~ 29012765 (-) True G31890

Expression Profile