RNA id: XM_043236022.1


Basic Information

Item Value
RNA id XM_043236022.1
length 4235
RNA type mRNA
GC content 0.42
exon number 7
gene id syt10
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 5053790 ~ 5068865 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCCAAAGAATCTGGTGCGCCTTTGCGCGGAGGACATGGACTTGGacgcatctctctctctccattccCTTACGCATCAGCTGCGCTCAGCAGCTCACATGGTGCCCAAATGAACCCTCGCCCTCACGCATCGTCTAACATACAATGGATTAACAGGAAAGACATGAATGTCCGCACAGAGGACGGCATTAGCCTGTGCCAAAGGGCTCTCCAAATAGTGACGGAGCTGTGCCTCGCAGGGCACGTCGACCGGGAGAAATGCGCGGATATATTTCCACTGGAGAGCAACATACCAGACATCTCTGTAAGTCTCCTAGCTGTGGTCGTAGGTTTCTGTGGGCTCGCCCTTTTGGtagtctctctctttgtcttttggAAGCTGTGCTGGCCCATTTGGAGAAGCAAGGCGCTCTCGTCCAATGCTGACAGCTGCCCCCCGGGGGTGATGCCCGAGGCCCCCCCGGCCCTGGCCCCACCTCTGGTGTCTCGTTCTGTTTCTCCTTATCCTGAGGCTAAGGTAATGGGAACCCTGGGAAGACAGCCATCCCAAATCCAGCAAGAGGATGAGGACGATAAGAAGAGGAAGGTACCAGAAGTGAAGGTCAACGGCCGCAGCTCGGTTAAGCTTCTGGAGGCGGCCATGAAGATCAGCCAGACATCACCAGACATTCCTGCTGAGGTGCAGCAGGCTCTGCGTGACCGTCTGAGCAAACAGCCCAAAATCCAGAGGCAGACCACCGAACCTACCTCGTCCTCCAGGCACAATTCTTTCCGTCGACACCTGCCACGTCAGATGAATGTGACCAGCGTGGACTTCACCATGGACACTCTACCGGTGCGCCAGTCTTCTGCGGTCAGCATCGGTCGTATCAAACCTGAGCTGTACAAGCAGAAGTCTGTGGACTCTGAAGAAGGTGCCAAGGAGCCGGTAGAGACATGCGGCAAGCTGAGCTTTGCCCTCAGCTACGACTACGAGGAACAAGCTCTAGTGGTTCGCATTTTAAAGGCCCTGGACCTGCCCGCCAAAGACTTCACAGGCACCTCTGATCCCTACGTGAAGATCTACCTGCTTCCAGAGCGCAAAAAGAAGTTTCAGACGAGGGTCCATCGCAAGACGCTCAACCCCACTTTCGAAGAGGCCTTCCGCTTCCCTGTGGAGTACAGTGAGCTGTGCAATCGCAAGTTGCACTTCAGCGTGTACGACTTTGACCGCTTTACGAGTCACGACATGATCGGAGAGGTGGTGGTAGATAACCTCTTTGAGCTGTCTGACCTATCACGTGAAGCTGTGGTTTGGAAGGACATCCTTGCAGCCACTACAGAAAGTGTTGATCTGGGTGAAATTATGTATTCCCTTTGCTATCTTCCCACGGCTGGACGCATGACCCTCACCGTCATCAAATGTCGTAATCTGAAAGCAATGGACATAACCGGCTACTCTGATCCGTATGTAAAAGTCTCACTCATATGTGACGGTCGGAGACTGAAGAAGCGGAAGACAACAACCAAAAAGAACACGCTCAACCCTGTCTATAACGAGGCCATTATTTTCGACATCCCACCTGAGAATGTGGAGCAGGTCAGCCTGTCCATCACGGTGATGGATTACGACAGagtTGGACATAATGAAGTGATAGGGGTATGCAGGGCAGGGCCGGATGCGGAGGGTCTTGGGAGGGATCACTGGAACGAGATGCTAGCTTATCCTCGCAAGCCTATCACCCACTGGCATGCACTTTGTGAGTGGCCTGGAAGAGCATCCAGTTTTGAGAGTCAAGGATCATGTCCATCCCCAAAACCCCCACAGACCCCATAACACCCTGAAGTCCAGACAAATCTAACCGCAAAACACATTTGGTTTGTATAATTAATAGGGTATATTTTTCTCTAGTTTAGCTTGTTGCATTTGTATTTGGAAAAGGACTAAAAATGACTGGTATCCCTGCTACAGACACAATCTGAGTTTCCAAATGTCACAGTTTCTCtgattttgttttactggtgCTGAGATTATGAGCTCCTAAAACAATAGTTTTCAGGTCACTTTGAAGCTGACAGTGAAATAATTGTGAAGCCTCTTGCTGTTTGACAGTATAATGAGGCAATGTCATTTTTGCAGACGCGTGAAATGACAGTGCTTATCATTTCATATTCTTGAACATTTCAGATATATATTCTCCCGTCTGGTTGAAACATTTGACAAATTTGATGCGGGGTTAggggaaagaagaaaaaaaagaggcgtTCGAATATGAAATTAAGATCTGTTCACGCAATCACACCAAATGGAGAACAATGGAGATGTCAACattgttacaattatttataagcCTCTAATATGtctttctttatataaaaaaaaacagatgttaCAAAACAGCACTTCTTTATATCACCTTTAGAGTCATAACTCTGCGAGGCATCATGAACAAGAAAGCACTGGCAAAGCATgtttaatatacatacataaggAATACTAACTGAGATCAATTGCTTATTAACCGTTGTTTCTGAAGACTTTATCTCAATAAAACTGTGGTAGcatactgatttaaaaatgagtattaaaaatgaatttaatttacatcAATACTTGATGTGCTCATCACACTTGAATGTCTAATAGTTGgtgaataaatagaaaatattacagtCATTTAGCCTTTAAACATATATGGAAACTAGGATAAGCAGATTCATAAAGGCattgctatatttaaaaaatctggatATACAAAAAGCACAGACATATAGCAGTAAGCCACTAAAAGGTCACTTAAGAGCTGTCATAATATACCAAATTTTGTCCATAATTAGGCATTTGTCTTTTAGCATATGCTGAAAATTATGGTCAAAAGGAATTTTCACAGTAGCCAAACAATGTAGCTTGTtgtattttagttgtttttgaaaaaactgaataaaatcatcaaCATACAGAACAATATTCATATCAATTCATGctgtctttaaaaacacttgcCAAAAATTCAATCCTGAATCACAATCATCCCACTCCTGTTCTCCGCCCTAGACTTactgatgtattaaatatttccTTTACCATTACTAAAAACTCTTACAAGtaaaaagtgtttgaaaaaatagacaaataaatgaacatttaatggTGTTTGATCCCACTGTAGGAAAGGtgctataaaaaaattctgtcaggcaaatattagaaaaatatatgcagGTCCATCTTCAGctgatgttaaaaaatataaaaaataaaatacgacGAGCTTTCTTTAGAGGGGTTCAAGGATGAATTGGTTCAGGGTAAAACCGATGTTTTCAAAGAGCACCATCTAAAGCAACTGAAGCAATTTTTTTCAGCGGAAAGAGAGGTGAAGCACTACCAACATTAATTTAAAGTGGATGGACAATAGAGAAACCTTGATTTACTTTTCATTCGAGTGAATTCCGCCCGTTGATTAGCAGTTTTGTTATGTCAGAGAATTAGCATTCATTGTGTGAAATCATCCAGCATCTATTCAGTCGGTATGCAAATAATATGGTACAACATGGTAATTGCACACCTAAGGTTTTAAATCTGGACCCTCGCGATTGGGTTTTCTGAGCGTATTCTGGTGTGTCCATTAAGTAATAATGCAATCATGGCAATTACACAAACGGCTGTGTACTGTTAACTTTAATTTGCACAAGACAGTGCTTCTGCCCCAGAGCTCGGTCGGCGTGATAGAACAAAGATGAAGTATTCTTGTAGCATGCTGATACCAGTACATTAGATATTGTTTAGAAATCTGTTATTTCTGAGaggtattatttttatttcatttaattccgCCGGTGCCAGCGCGTGTCTATATTTGAGGATTTCTTTGAATTGTTATGTTGTTAAAGTGCATTTCTATGGATCGTTTGGTGGTTGGTTTGTACTATGGGCTCGTGATCTtgaataactttatacacaatttgcatatattgtgtaatggcttctaaaaaaaattgtacaactGTTTTGATTAGCACTCACTTCCTGAGAATACTTCTTGTTCTTGCTATTGATGAACTGCTTCTCAGTGATTCTTTGTCATATTTGCACCGGACAACTAAAACGATCGCTATATATGTTGTTATGATGTGTACAGTTTGTGATAacttttgtaagaaaaaaaaggaaatgcagtaaatatttgaaatataattttactggatgtttcaaatgtattttaactaaataaattctGAATTGTCAAAGTGTA

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0008021 synaptic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250743.1 lncRNA upstream 44792 5006798 ~ 5008999 (+) True LOC122343282
XR_006250742.1 lncRNA upstream 47728 5003853 ~ 5006063 (+) True LOC122343281
XR_006250595.1 lncRNA upstream 50703 5000837 ~ 5003088 (+) True LOC122342552
XR_006250592.1 lncRNA upstream 56565 4994949 ~ 4997226 (+) True LOC122342545
XR_006250744.1 lncRNA upstream 59537 4992074 ~ 4994254 (+) True LOC122343284
TU38805 lncRNA downstream 13192 5082057 ~ 5082286 (+) True G26133
TU38817 lncRNA downstream 35166 5104031 ~ 5104341 (+) True G26145
TU38820 lncRNA downstream 42499 5111364 ~ 5111629 (+) True G26148
TU38827 lncRNA downstream 49117 5117982 ~ 5118242 (+) True G26155
TU38828 lncRNA downstream 53608 5122473 ~ 5122754 (+) True G26156
XM_043237820.1 mRNA upstream 88594 4958676 ~ 4965197 (+) False dmtf1
XM_043237821.1 mRNA upstream 88594 4958881 ~ 4965197 (+) True dmtf1
XM_043237834.1 mRNA upstream 108911 4935945 ~ 4944880 (+) True LOC122343397
XM_043237676.1 mRNA upstream 125089 4894882 ~ 4928702 (+) True LOC122343293
XM_043237678.1 mRNA upstream 159056 4889423 ~ 4894735 (+) False LOC122343294
XM_043237966.1 mRNA downstream 101885 5170750 ~ 5172410 (+) True ccdc59
XM_043237939.1 mRNA downstream 147594 5216459 ~ 5224944 (+) False cracr2ab
XM_043237941.1 mRNA downstream 147599 5216464 ~ 5224944 (+) True cracr2ab
XM_043237940.1 mRNA downstream 148053 5216918 ~ 5224944 (+) False cracr2ab
XM_043237848.1 mRNA downstream 170538 5239403 ~ 5254016 (+) True tspan11
TU38659 other upstream 111056 4929471 ~ 4942735 (+) False LOC122343397
TU38663 other upstream 111056 4935929 ~ 4942735 (+) False LOC122343397
TU38543 other upstream 424892 4550163 ~ 4628899 (+) False G25958
TU38544 other upstream 424892 4550163 ~ 4628899 (+) True G25958
TU38370 other upstream 818547 4232908 ~ 4235244 (+) True G25838
XR_006250627.1 other downstream 285467 5354332 ~ 5391626 (+) False pcloa
unassigned_transcript_304 other downstream 330015 5398880 ~ 5398967 (+) True trnay-gua_2
TU39144 other downstream 713079 5781944 ~ 5853381 (+) False LOC122342465
TU39141 other downstream 781564 5850429 ~ 5853381 (+) False LOC122342465
TU39185 other downstream 824120 5892985 ~ 5897771 (+) False LOC122342837

Expression Profile