RNA id: XM_043236025.1


Basic Information

Item Value
RNA id XM_043236025.1
length 3109
RNA type mRNA
GC content 0.40
exon number 3
gene id LOC122342219
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 15638512 ~ 15644874 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTCTGCTGCTCTCTGCTGGACGGTCTGTGGTCCAGATTGACTCGATTCAAATTtggttttaaatcaaaatgtggATTGGtttaatactaatactactaacactaatatgaaaaaataatatttgctgCAATACTATCTAAATGTCAGCCTGTGCAACATAATTGCACATTGCTGCggttgtattaaataaataagtgcgtGTGTGGATTTGACAACGCATAGCCTACTTCTGAGAAAAGTTTACAGATTATCAGCAAGACCaagcaaacaaaccaaaacagacaGTGCTCAGAATAATGGATTGTGGAaaattatagaatatataaCGCATTGATAAAATACTTAAGAAATGTAAATCTGATTTAGAAGCCAATTtataattcttatttattttattttaaaatataaaaagcgaGAAGGAGACGATGGTCATGTGACTGGTATGCGGACCAGAACAAAGATGGATGCGGAGAAGATCGACACCGAACTGGTAGCCAAAAAGCACTCTACCTCTGTCGTTTGGCGATATTTTGGCTTTAAGGTTACCGACACAGAGCAGAGAGAGGTACTGTGCAACATCTGCAAAATTAAAGTTGCTACTTCACGTGGCAACACGACAAATTTATATCAGCATCTGAAGCAGCACAGAGAAAAATACGATGAATGCATGACGGAGAAAACCCAGATTAGCAAAGAGGCGGTTACCCGAACAAATCAGAAAGTATTCACGGATATGTTTGCGAGTCTTAAGCCATATGATAGGTCTTCGCCTAGATATAAAGAAATCACAGACTCCATAACGCATTTCTTGGCGAAGGACATGATGCCTATACACAGTGTTAGTAAAGTGGGGTTTCAGAACATGATCCGAACACTAGACAAGAGGTACCAGCTGCCCTCGCGACACTATTTCTCTCACGTAGCAATCCCTACCCTTTATAACTCGCGCCGTGGTGAAGTTCAAAAGGAAATGGCTAAGGCGACGTTCTTTTCAACCACTACGGAGCTGTGGTCAAGCAGGACGAGTGAACCGTACGTTAACGTGACTGTACACTTTGTCGACGAGGAGTTTGAACTGAAAAGCCGCTGCCTGCAAACATCGTATTTTCCCGACGACCGCACCGGAGAGAACATAGCTTTGGGTTTAAGAGAGGTGCTGGCTGCATGGGACCTCTGCGAAGCTCGTCAGGTAGCCATCACAACAGGCAACGACACCAACCTCGTCAAAGCGGTTGAGCTTAATCAGTGGACTAGAATCCAGTGTTTTGGGCATAGACTTCATTTGGCCATTGAAAATACTCTGAAAGATCACGCCCAGTGCATTAACAGGGCTACTGGGATGTGCAGGAAGATTGTGGGCCACTTCTCCCATAGTTGGAAGAAAAGAGTGGCCTTGAGGGAAGCACAAAGAGAGCTTAATCTCCCAGAGCATGCCATGGTGACAGACTGCTCAACACGATGGGGTTCCACTCAGAAAATGATAGCAAGAGTCCTGGAGCAGCAAAATGCATTGTCCAAGGTTCTCTCCACAGACCGCAAAGTGCAACACTTACTCCTTTCGTGGCAGGACCTGGAGGTCTTGGAATCTGTAAACAAGGCACTCAGCCCACTCAAGGACTTCACGGATGCCTTGTCAGGTGAAAGTTATGTGAGCATATCTTGTGTGAAGCCTGCTCTGCATATTCTGAACAGCTCCGTGCTGGTGAAAGAAGAAGTGGACACTGACCTGACCAAATCACTGAAATCAAATATTCTTAGCTACCTCAATAACAAATACGAAGACACACAGGACTTGCTAAACTTAACCACTTTCCTAGACCCAAGGTTCCGATCACAAtacatccccgcagaagtgaccGAGACCTTAAAGGAACGAGTCATCTCTGAACTGATGgAAATTCATCAAAAGCAGACCCAAGTAGTCCCAAGCACTGCAGTAATGGAGAATGATAGTCTGGATGTGGAAAGTCCACCAGCTGCTAAAGCCAAGAAGAAAACTCTAGCCAGTTTCTTCCAGGAAAACACATACACAGCACCGAGAGCATCGTTATCAAGGACATTTGACCCCATGGCACAGTTTAGAGAAGCGGTGGCTGCTGAACTCAACGCTTACATTTACATGCCACATGTAGACCATGGAGAAGATCCACTGAAATGGTGGAGATTCCACAAAGTGAACTTCCCTAGGCTATGCAAACTAGCACAGAAATATCTGGGCATACAAGCAATAAGCTCTGCATCAGAGAGAGCTTTTAGCTCTAGTGGTAATGTTGTATCGAATCACCGCTCCTGTCTGAAACCAGACAAAGTGgatatgcttgtttttttgtcaaagaACCTCTGATGTGATAAGTGGAACTTTTAGAAAGAAGATTTGGAAGTACCAGTtggtcataaaaaaaagaaaaaaaagattgagaTCGTTTGAGTTTGACcatttaatgttcaaaataatttatacagAGTATGTGTTACATACTGCATAAACGTTTCTATTTGTTTAGACAGTGtctaaaatgtcttatttttgtgaaaatgtatgtttgcattaatgaaaatgttatttaatttagtaaaaaaatcacatttacacaaatacattcaaaacatGGCACTAATACAGAAAATagataaatctaaaataaatgctcattttaatcACCTATGCAATGCATCTATTAAATTATGAAGAATATGTTAGTATGCACAATTTGTGAAAACCTGAAGAGTTTTTGTTGACTTAAAAGTGGTTTTAGAATTTCATACAAATGCATTGCCACTGAAACAgcattatatttgaaatgacaCATCACagtaatgcatgcattttaaccATTAAAGCCTGTATTAAAATACTACATTTGTTAGGTTCATATCTATCAACCAATCAATGATAATCCCTAGAACATCCAAAACCTCACCCAtcacagaatggagaaaaaaaaaaaccttggagAAACCACGCTCAGTTGGGGTCCAGTTCTCCTCTGGATATATCAACATAACATTAATTTCTGTAAGTTTTGAATGAATTGTATGATTTAAATACACTATCATTGATTTCAGTCTggatttaaatattcaaacaaataaatataaaatgttttta

Function

GO: NA

KEGG:

id description
K24637 ZBED1; zinc finger BED domain-containing protein 1 (E3 SUMO-protein ligase ZBED1)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42711 lncRNA upstream 146330 15488076 ~ 15492182 (+) True G28813
TU42692 lncRNA upstream 218209 15413147 ~ 15420303 (+) False LOC122342869
TU42685 lncRNA upstream 263975 15374110 ~ 15374537 (+) True G28797
XR_006250764.1 lncRNA upstream 297008 15339618 ~ 15341504 (+) True LOC122343380
TU42594 lncRNA upstream 523984 15114111 ~ 15114528 (+) True G28745
TU42843 lncRNA downstream 80318 15725192 ~ 15725554 (+) True G28882
TU42850 lncRNA downstream 92594 15737468 ~ 15737762 (+) True G28888
TU42851 lncRNA downstream 109939 15754813 ~ 15755128 (+) True G28889
TU42852 lncRNA downstream 195328 15840202 ~ 15840666 (+) True G28890
TU42858 lncRNA downstream 283257 15928131 ~ 15928838 (+) True G28896
XM_043236561.1 mRNA upstream 36506 15595661 ~ 15602006 (+) True nup50
XM_043237013.1 mRNA upstream 223967 15413147 ~ 15414545 (+) True LOC122342869
XM_043237806.1 mRNA upstream 282957 15342262 ~ 15355555 (+) True LOC122343379
XM_043237803.1 mRNA upstream 425808 15157755 ~ 15212704 (+) False LOC122343376
XM_043236428.1 mRNA downstream 5476 15650350 ~ 15653260 (+) False cdkn1d
XM_043236427.1 mRNA downstream 5622 15650496 ~ 15653260 (+) False cdkn1d
XM_043236533.1 mRNA downstream 729702 16374576 ~ 16377941 (+) True LOC122342595
XM_043236536.1 mRNA downstream 733759 16378633 ~ 16398499 (+) True LOC122342597
XM_043236539.1 mRNA downstream 733760 16378634 ~ 16398499 (+) False LOC122342597
TU42701 other upstream 82830 15439334 ~ 15555682 (+) True G28806
TU42601 other upstream 424080 15207151 ~ 15214432 (+) True LOC122343376
TU42446 other upstream 1155691 14400029 ~ 14482821 (+) True tafa5a
TU42445 other upstream 1155691 14424931 ~ 14482821 (+) False tafa5a
TU42431 other upstream 1454252 14177464 ~ 14184260 (+) False tbc1d22a
TU42722 other downstream 5421 15650295 ~ 15655181 (+) True cdkn1d
TU42853 other downstream 196498 15841372 ~ 15841855 (+) True G28891
TU42861 other downstream 340345 15985219 ~ 15985726 (+) True G28899
TU42966 other downstream 829024 16473898 ~ 16474381 (+) True G28982
TU43729 other downstream 2655541 18300415 ~ 18301189 (+) True G29526

Expression Profile