RNA id: XM_043236027.1


Basic Information

Item Value
RNA id XM_043236027.1
length 2150
RNA type mRNA
GC content 0.36
exon number 4
gene id sapcd1
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 15644189 ~ 15647843 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tctgaaatatTAGTggtttattttcaaatagtGTTAACACACCTCTTATTATTTCAGTCCAGGTTTAGTCACATTCCCTAACGTGTTGGAACAGAAAACCCATGGCAGAGACTCAGTCAGGTCTTTCCAGTTTCAACTGACAGCTCGGGGGTCCATAATGACATCTTGCTGCGGGGAATAATGTCTTACAATCACAAAATCTTATCTCTGTTAAATTCTTTAGGTGAATATTTAGAGTTCTGGTTTTGCAGTTTAGGTAACGAGGCCATCATAACGACAGATGCTCTTCATCATCAGCTTTTATAGAAATCCATCACAGATAGTCATTTACATTCCTTCCGTCTGTCCTTCCCTCCGTCCCTCCCTCATTCTCACAAGGCTtcatatttctttgttttttgcctTCTCTGTTCTGATCATTCATTTTGTGTTATGTCTTGAGCTTGGTGCCAGCTTCTGAACACATGGCATGTGATTACACCGTCCTCATCATTCCTCTCCAGAACAGCCTCTACAGCCCTGACGCACTTCACTGCTTCCACTCGcTAAAGAAACGTAGAGATCTGGAAAGACAAAAAGACATCCTGTGGGCTGGACTGCAGGTAGTGGAACAAACACAGCTGTGGTACCAGAATCGCCTGAAGCTGAATTTACAAAGACAAGTTTGCTTCAGTACAGGAGACTTAGATGGAGAGAAATCTGCAAATCGCCTGTACCTTGCAGGGAAGGTGGTCTTGCGCTATGCGGTCTTGTATGCAGCGTGCGAACGGGAGTTTGGGCAGTATGATGAGCGATTCCTGTGTCTGGAACAATCTGGCCCCAGAGGAGAGCGGGGGATCGGACTGGGACCTCCGGTGGAGCAATGCCACATTGGTCAAGGAAGTGAATCAGCAGAATCAACAGATTTCAGTGTTGGAACTTGAGAAGGCACAACTTCTTCAGCAGCTTGTTTTAAAGAACACCTGAATAATGacattgcacattttaaactttaattgcaaaaggctttctttttttaaatcacgcAGCGACCTGTAAATAGTTAAAGCTGATTTGAAAAGACTGAATGGTAAAAGTAATTTTAGCTCTAGTATACGCTCAGTCCACACTATTTTTTATCTTCCAGCTGAAAGGGAATTAGAGATATATgttcaatgtttttcttttcttaaactATTTGTTGATACTGTACATAAAACTCATTtgttaataatgattaaaatactttttttactacttacacaaaaacagttattgaaatataattcaaaacACGACCACATTTTTTGAAGACACTAATGGCAACATCTGAAAGCTGTCTTGAGACCTCGTTTCCTTTGTTCTCTGATGTGCATGATTGTAATATGAATGGCATTGCTCGTCAGGGccagcaacagtaactaaggagaGTGGGCCTTTGTCAATCATCAATTacataaaactgtatatattaatttcacaaaataaaaacattttatatttatttgtttgaatatttaaatccAGACTGAAATCAATGATAGTGTATTTAAATCATACAATTCATTCAAAACTTACAGAAATTAATGTTATGTTGATATATCCAGAGGAGAACTGGACCCCAACTGAGCGTGGTTTctccaaggtttttttttttctccattctgtgaTGGGTGAGGTTTTGGATGTTCTAGGGATTATCATTGATTGGTTGATAGATATGAACCTAACAAATGTAGTATTTTAATACAGGCTTTAATggttaaaatgcatgcattactGTGATGtgtcatttcaaatataatgcTGTTTCAGTGGCAATGCATTTGTATGAAATTCTAAAACCACTTTTAAGTCAACAAAAACTCTTCAGGTTTTCACAAATTGTGCATACTAACATATTCTTCATAATTTAATAGATGCATTGCATAGGTgattaaaatgagcatttattttagatttatctATTTTCTGTATTAGTGCCatgttttgaatgtatttgtgtaaatgtgatttttttactaaattaaataacattttcattaatgcaaacatacattttcacaaaaataagacattttagaCACTGTCTAAACAAATAGAAACGTTTATGCAGTATGTAACACATACTctgtataaattattttgaacattaaatgGTCAAACTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250641.1 lncRNA downstream 198960 15443764 ~ 15445229 (-) True LOC122342747
TU42788 lncRNA downstream 225951 15416856 ~ 15418238 (-) True G28850
TU42674 lncRNA downstream 430738 15209684 ~ 15213451 (-) True G28789
XR_006250554.1 lncRNA downstream 620326 15017785 ~ 15023863 (-) True LOC122342397
TU42586 lncRNA downstream 640760 15003149 ~ 15003429 (-) True G28738
TU42849 lncRNA upstream 85520 15733363 ~ 15733883 (-) True G28887
TU42857 lncRNA upstream 195562 15843405 ~ 15843739 (-) True G28895
TU42859 lncRNA upstream 280300 15928143 ~ 15928900 (-) True G28897
TU42891 lncRNA upstream 730857 16378700 ~ 16383670 (-) True G28916
TU42910 lncRNA upstream 764017 16411860 ~ 16419956 (-) True G28933
XM_043237519.1 mRNA downstream 11737 15613118 ~ 15632452 (-) True large1
XM_043236562.1 mRNA downstream 32614 15601440 ~ 15611575 (-) True kiaa0930
XM_043236319.1 mRNA downstream 55281 15555251 ~ 15588908 (-) True LOC122342488
XM_043236578.1 mRNA downstream 495979 15143788 ~ 15148210 (-) True alg12
XM_043237808.1 mRNA downstream 507652 15124045 ~ 15136537 (-) False brd1a
XM_043236426.1 mRNA upstream 8232 15656075 ~ 15664306 (-) False slc37a3
XM_043236425.1 mRNA upstream 8232 15656075 ~ 15664306 (-) True slc37a3
XM_043236424.1 mRNA upstream 16600 15664443 ~ 15673234 (-) True zgc:171422
XM_043236016.1 mRNA upstream 26976 15674819 ~ 15680118 (-) False tmem19
XM_043236018.1 mRNA upstream 26976 15674819 ~ 15680024 (-) False tmem19
XR_006250613.1 other downstream 32614 15601440 ~ 15611575 (-) False kiaa0930
TU42583 other downstream 616571 15024587 ~ 15027618 (-) True LOC122342864
TU42581 other downstream 616571 15026110 ~ 15027618 (-) False LOC122342864
TU42549 other downstream 834052 14808597 ~ 14810137 (-) False LOC122342642
TU42539 other downstream 947003 14695860 ~ 14697186 (-) False LOC122342862
XR_006250809.1 other upstream 199126 15846969 ~ 15847087 (-) True LOC122343609
XR_006250818.1 other upstream 209541 15857384 ~ 15857502 (-) True LOC122343689
XR_006250819.1 other upstream 232278 15880121 ~ 15880239 (-) True LOC122343700
XR_006250820.1 other upstream 232677 15880520 ~ 15880638 (-) True LOC122343711
XR_006250908.1 other upstream 234658 15882501 ~ 15882619 (-) True LOC122343928

Expression Profile