RNA id: XM_043236039.1


Basic Information

Item Value
RNA id XM_043236039.1
length 3412
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC122342227
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 17720148 ~ 17726796 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCAATGATAGTGTTTAAATCGATACAGATAAttcagtcttttcttttttttttacaagctttGTAAACCGAATCGAATATTATCGAGCGCAACGTAATGCTTTATCCAACGTTAACGCACGTTGTTTTTGTGACTGAAGCGCATCCACAAATGAGTAACAGACACCGTGCTCTCGTTTCGCTCTCTATTATCGGGAATTGTCGTTTCATAAACGCGAGTGGCGCTAAAATGAATTGCTTTgctaaatgattcagtgaaccGAATCGCTCGAGTCGCCGCACGTTGACGTCACATCAAACGAGAACACTAACTAGAAACTTGTTGTtagattaaatgtaaacaattatggactttaatatgtattttaaatgtacatatcgTCATTTATATGATGTGTAGTGCTAGTTTATAGTGTTATTGTTCTCTTTTAAATCAATTGTGATGTTCTTCAGGCCATGAACTATCACTCCCTTACCGTTTTTTCTGATAATTATTCTCATCTTAAACTCGACAGCGTCCCGACACAGAAAAAGCAGCGTAACGCCCGAAAGATGTCGTTCATTAAAGAGGAGCGCGAAGACATGAAGATCGAAGAAGCATTCAGCGTGAAACGAGAAGAACCCGAGGAACAAGCGAAGATGGCACTTATTAAAGAGGAGAAGGACGACTTGAAGATCGAAGAAACGTTCGGGGTAAAACGGGAAGATGCCGAGGAACAAATAAAGATTGTGTTTATCAAAGGGGAGAAAGAAGACGTGAAGATCGAAGAAGCGTTCGGGGTCAAACGTGAAGATcctgaggaacaaacagaCCTAATGGCAgcgaaagaagagaaagaagctCTCGGTCAATCTGAAATAGCACATCAACGTGAGAATCTCCAAAAGACTCAACAGAGAACCCCTGAAGATCAAACGGGAGAGAGTTTCTCTCATGAAGCAAGTCTTGAGAGGCACGTGAAGATTCACGCCGGAGTAAAGCCTTTCATATGCCTTcggtgtggaaagagtttcaccCTAAAAGAAAACTTCAACAGGCACGTGAGATCTCACACCGAGAAGAAGCCCCACGCGTGCCAGCAGTGCGGCGTGAGGTTTGCTCAACACGGACACCTGGAAAGCCACATGAAATTTCACACCGGGGAGAGCCCTTTTACTTGCCAACATTGCGGAAAATGCTTCGCTTGTAAATCGATTCTTGAGAGTCACTTAAGAATTCACACCGAAAAGCGCTTCGTCTGCCCTCAGTGTGGAAAATCCTTCAATCAACGGGGAAACCTCAAGTCCCACATCAGAATACACACCAGAGACAGCGAGAGTGCCTTCgtctgccaacagtgtggaaagagatTCACTCACATAGGAAGCCTGAACGGCCACATGAGAACTCACACGGGAGAAAAACCCTTCACGTGCCACCAGTGTGGAGACAGCTTTGCTCACAATGGAAACCTTAAACTCCACATGAGaatccacaccggagaaaagCCTTGCAGCGTGTTTAACGGTACAAAAACTAactttcatttgtcttttttcgtCACAGACATCCTGTCGCTGAAAGAGGAGCCAAAGAAGGCATTctcctgccaacagtgtggaaaaggTTTCAATAGAAAAGGCGACTTGAACAGGCTGAGAgctcacaccggagagaagccttttaCCTGCAAACAGTGTGGAAAAGGTTTCATTCAAACAGGAGACCTTAAGGTGCACATGAGacttcacaccggagagaagccttacgcCTGCCAACTGTGTGGAAGTAGTTTCACTTATGAGGTAAGCCTTAAGGTCCACATGAGAACTCACACCGGAGAAAAGCCTTACACCTGTCAACAGTGTGGAAAAGGTTTCGCTCAGAAAGTAATCCTTAACAGGCATGTGATCATTCATACGGGAGAGAGACCTTTCGTCTGCCAACAGTGTGGGAAAAGTTTCTACCAAAAAGAAAGCCTTGACAGGCACCTGAAAACTCACTCCGGAGAGAAGCATCACGTGTGccatcagtgtggaaagagtttcaacCAGACGGGAAATCTTAAAGTGCACATgaggattcacaccggagagaaacctttcGTCTGCGAGCGGTGTGGAAAAAGTTTCTCGTGTAAGGCGGACCTCGAAGCGCACTtgagagttcacaccggagagaagcccttcgcctgccaacagtgtggaaagagcttcacTAAAAGAAGAACCCTTAATAACCACATGATAATCCATACAGGGCAGAGTCCTTTCGTCTGCCAACGGTGTGGAAAGGGTTTCAGCCAGAAAGAAAGCCTTGAAAGACACGTGACGATTCACTCCGGAGAGAAGCATTACGTGTGTCAtctgtgtggaaagagtttcaacCAGACGGGAAATCTTAAAGTTCACTtgagagttcacaccggagaaaaACCTTTCGCCTGCGAACGGTGTGGAAAAAGCTTCAATCGAAAAACGAATCTGAATCAACACGTGAAGATAATTCATACGGGAGAGAGTCCTTTTGTCTGCCGACAGTGTGGACAAGGTTTCACCAGAAAAGGAAGATATGACAGGCACGTGGGAATTCACGCTGGAGAGTGCGGCGACAGTGTGGAATAAGATCACTCTGGAGAGAAGCGCTCTGTACATCATCGGCGTGGTGTAAGGAGGTGAATAAGTAAACACCCCCCCCCCCTCATGATGTGATGTCATGCAGATGTTCGGCAGAGTTTTACCAGAAGAGTGTGAAGAAGAAACTTGACTGGATCAAGAAACGTTACACATCTCCTTGTTCGTGTGCTCCGCTTGGTGTTTATTCTAAACTTTGTCCAAAGTAAAAGTGTAGGTTGTAAAGGAACCTCTGAATACCGATAAACAGCGCAGTAAACATGAACTTTCAGCTCAGTGTGCATCTTCTGTATTAAACGTAGCGCTAACCACGCACGTGAACTTACACTCATTCATCTCACTGAAGATCAAACTGAAAGTAAACTAAACCTGCTCTGGCGGAAGTGATGTCAGTGCTCTGCACGCTAGACCCAGAGCCGGTGTTTTTCTAACAATAGGACAATACAAGTTGGTACAAAACATTTGAGACTATAAAACACTGAACGTGTCGGGAACATGTCATTGTCATGTTTTCTGGAGGTTTTCCTTAGACGTAATTTCATTCAATTCCATATAGAAATAAAGACTTTACTGTACGCACTGTACACAAAATCTGCGTTCATGACGTTCACATATCATTGTATCCCAGTTTGTGCTGAATACGGTATAATCGCAATCTTGCCAGTTTGACTGTCCCTGTTGCTTCTGACTCATAGCGGgcaaagaaacattttggtCCCTCTGCCAAGGCAGCGTTGCCAATGTCAGCCATAGGATTGCTAGGTGTGTAACTAGTGATGGCCCTTTGTTCTGAAGATGC

Function

GO:

id name namespace
GO:0005669 transcription factor TFIID complex cellular_component

KEGG:

id description
ko03022 Basal transcription factors

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43565 lncRNA downstream 18775 17699424 ~ 17701373 (-) True G29408
TU43543 lncRNA downstream 77511 17642379 ~ 17642637 (-) True G29388
TU43360 lncRNA downstream 166184 17553762 ~ 17553964 (-) True G29273
TU43271 lncRNA downstream 370642 17349289 ~ 17349506 (-) True G29212
TU43231 lncRNA downstream 500695 17219151 ~ 17219453 (-) True G29179
XR_006250673.1 lncRNA upstream 5607 17732403 ~ 17733334 (-) True LOC122343157
TU43563 lncRNA upstream 16656 17743452 ~ 17744244 (-) False LOC122342228
TU43581 lncRNA upstream 23015 17749811 ~ 17814034 (-) True G29420
TU43586 lncRNA upstream 69276 17796072 ~ 17805409 (-) True G29425
TU43611 lncRNA upstream 90766 17817562 ~ 17817933 (-) True G29440
XM_043237362.1 mRNA downstream 358 17717764 ~ 17719790 (-) True LOC122343057
XM_043237402.1 mRNA downstream 3097 17713746 ~ 17717051 (-) True LOC122343083
XM_043237470.1 mRNA downstream 6625 17711195 ~ 17713523 (-) True LOC122343120
XM_043236812.1 mRNA downstream 81406 17637023 ~ 17638742 (-) True srd5a3
XM_043236813.1 mRNA downstream 83859 17631493 ~ 17636289 (-) True tmem165
XM_043237338.1 mRNA upstream 1726 17728522 ~ 17731397 (-) True LOC122343038
XM_043237340.1 mRNA upstream 1726 17728522 ~ 17731154 (-) False LOC122343038
XM_043237339.1 mRNA upstream 1726 17728522 ~ 17731104 (-) False LOC122343038
XM_043236040.1 mRNA upstream 7810 17734606 ~ 17744543 (-) True LOC122342228
XM_043237272.1 mRNA upstream 113268 17840064 ~ 17851149 (-) True ckap2l
TU43541 other downstream 81439 17637159 ~ 17638709 (-) False srd5a3
TU43209 other downstream 598019 17118628 ~ 17122129 (-) True xrcc3
TU43174 other downstream 702325 17006927 ~ 17017823 (-) True G29135
XR_006250655.1 other downstream 819853 16886974 ~ 16900295 (-) True prkchb
TU43020 other downstream 1011188 16707774 ~ 16708960 (-) True G29022
TU43577 other upstream 8554 17735350 ~ 17736274 (-) True G29417
TU43653 other upstream 243809 17970605 ~ 17979922 (-) True G29473
TU43941 other upstream 681764 18408560 ~ 18428343 (-) True G29653
XR_006250671.1 other upstream 930184 18656980 ~ 18661653 (-) True LOC122343054
XR_006250670.1 other upstream 930184 18656980 ~ 18661649 (-) False LOC122343054

Expression Profile