RNA id: XM_043236049.1


Basic Information

Item Value
RNA id XM_043236049.1
length 840
RNA type mRNA
GC content 0.44
exon number 7
gene id LOC122342238
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 19064025 ~ 19067883 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGCTGATAAGAGTCAGATGTGTCTGCTGGGACTCGTTCTCTCTGCACTTCTCACAGgTACCGGTGGAGCGCGTGATACTCATGTGTTCTGCAGTTCTGGTGAAAATGTCAGTCTGCCCTGTAATAATGCTCTTTTTGGCTGTACATCAACTGCATGGATGTATAGCAAACAATGGACAGTTGAACTGATTTAtggaggaaagaagaaagacatagAGAGATCTGAGAGACTGAGTCTGGGCTCTGACTGCTCTCTGAACATCACTAAAGTCACGAAAGAAGATCATGGATCTTACATCTGCCGGCAATTTGTGACTGGAAAACAAGGAAAGAATGAACAACAAGGAAATGATTCACGCGTTTATCTGCATTTTCTTCATGtcACTTCATCCTCCTCTCAGATCAGTCCAGGCAGctctgtgactctctcctgTCAGTTGTATTGTGATCTAATCTCTTGTGATTCTTTGGTCCGTGATGAAGTTCAGCTGATCTGGGTGAATCAGTTTGGTGTGAATCTACAGACAGACTCCAGATATCAGATCTCATTCTCCTCAGAACACTGTAACATCTCTCTGACTACAAAACTCCAGAATGAAGATCTCAACAGAGAGTGGAGATGTGAGGTTACTCAGAGAAATCAACCGAAGACCTCGGTCACGTATACTGTCAAGTATTCAgCTGCAGTCGATTCAACAAAACCGATTCCAGTCAGCAGCTCCGAGAAGAAACCAAGACAAACTAAACCAGCAGCTCAAGATGCAGCTGATAGCGCGTGTAAGACGATACGTTATTCAGAGGTACGAAATGGCTTTGCTTGCACCCGAAACCATCACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44175 lncRNA upstream 10611 19045710 ~ 19053414 (+) True G29803
TU44169 lncRNA upstream 96311 18967387 ~ 18967714 (+) True G29797
TU44148 lncRNA upstream 131335 18932319 ~ 18932690 (+) True G29777
XR_006250682.1 lncRNA upstream 156201 18903235 ~ 18907824 (+) True LOC122343164
TU43902 lncRNA upstream 248747 18814883 ~ 18815278 (+) True G29633
TU44189 lncRNA downstream 11885 19079768 ~ 19080189 (+) True G29809
XR_006250695.1 lncRNA downstream 301888 19369771 ~ 19371889 (+) True LOC122343175
XR_006250711.1 lncRNA downstream 338020 19405903 ~ 19406459 (+) True LOC122343189
XR_006250720.1 lncRNA downstream 346578 19414461 ~ 19414983 (+) True LOC122343198
XR_006250725.1 lncRNA downstream 445190 19513073 ~ 19513595 (+) True LOC122343203
XM_043236046.1 mRNA upstream 101051 18960662 ~ 18962974 (+) True LOC122342236
XM_043237335.1 mRNA upstream 110426 18950727 ~ 18953599 (+) False LOC122343037
XM_043237337.1 mRNA upstream 110426 18950924 ~ 18953599 (+) True LOC122343037
XM_043237336.1 mRNA upstream 110426 18950924 ~ 18953599 (+) False LOC122343037
XM_043237417.1 mRNA upstream 126360 18933707 ~ 18937665 (+) True LOC122343092
XM_043236050.1 mRNA downstream 79118 19147001 ~ 19150635 (+) True LOC122342239
XM_043236051.1 mRNA downstream 197472 19265355 ~ 19268050 (+) True LOC122342242
XM_043236055.1 mRNA downstream 377678 19445561 ~ 19449833 (+) True LOC122342246
XM_043236059.1 mRNA downstream 636016 19703899 ~ 19706327 (+) True LOC122342253
XM_043237387.1 mRNA downstream 677851 19745734 ~ 19750074 (+) True LOC122343071
TU43926 other upstream 177623 18883179 ~ 18886402 (+) True G29642
TU43756 other upstream 602708 18436460 ~ 18461317 (+) True G29545
TU43729 other upstream 762836 18300415 ~ 18301189 (+) True G29526
TU42966 other upstream 2589644 16473898 ~ 16474381 (+) True G28982
TU42861 other upstream 3078299 15985219 ~ 15985726 (+) True G28899
TU44195 other downstream 222337 19290220 ~ 19342911 (+) True G29814
TU44225 other downstream 663379 19731262 ~ 19786128 (+) False G29835
TU44230 other downstream 677858 19745741 ~ 19747442 (+) False LOC122343071
TU44267 other downstream 970055 20037938 ~ 20040195 (+) False LOC122343063
unassigned_transcript_309 other downstream 994771 20062654 ~ 20062727 (+) True trnam-cau_2

Expression Profile