RNA id: XM_043236050.1


Basic Information

Item Value
RNA id XM_043236050.1
length 1008
RNA type mRNA
GC content 0.51
exon number 8
gene id LOC122342239
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 19147001 ~ 19150635 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGTCTGTGAAGAGTCGTCGTGGTGTGCCAGGTCCCTCCAGGAGCGAGCAAATACCTGACGTAGAAATGGCCGATCCCGAGTCATCACCTGTGGCTGATCCTCCTGTTCTGATCTGGGTGATGATTGTCCGGAGTTCGACGCCACAGGTGGATCCAGACAGTGATGAGGATTTAGCAGATTGTGCCATTTCTTTTGAGCCTGAGCCAAGCTGTCAGACCGGTTCTGACCAGGCCAGTGAAGCTCCAGTCCCCACCTGTGCAAGAGGACGTGGAAGTTATGGCAAGGTGTATGAGGCAACCTACCTAGTTGGTGACAAAACGACGGTTGCCGTGAAGTACATCCGCAAGCGTCAGAGTGACCATTATCTTCAGCTTgctggtcattccaaacccgtgcTTGCAGAAGTGGCAATGTTGCTCAGGTTGGGAAAACCTCCATTATGCCCCAACGTCATCAAATTCCATGAATggactgaggaaaaaaatagcGTCGTGCTCATCATGGAGTACCCTAAACCTTGCTGTACCTTGAATGAGTACATCAAGCGCTCGAAGCCCATCAATGAAGAGAAAGCATGCTTGTTAATCCGCCAGTTAATCCAAGCTTTGAAACACTGCCGCGACCGAAGGGTCTTCCACAACGACATCCACACGAAGAACATCCTAGTGACTCCCACTACTTTGGAGCTCAAGCTAATTGACTTTGGCCACGCTCAACTGATCAACCACGGGGGCAATCTCAGCAGTCAATATCgagGACCAACGCTCTGCACCCCACCTGAGGTCATGAGGGATTCCACGTTCCACGCCGGCCCGGCGTATGTCTGGGCTGTGGGCATGATTCTCTTCCGAATCCTGCATGGATATCTGccctttaaaagcaaagacaaaatacTGTGTAACTGCACTCCTGTGATACGGACTTTGTCCCCAGACCTGGTCTGTGAGGATGTAGAGTCCAGTGGTGTAACTACAGATGGTGCAACCATCTTACCCTTCGAGACGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44189 lncRNA upstream 66812 19079768 ~ 19080189 (+) True G29809
TU44175 lncRNA upstream 93587 19045710 ~ 19053414 (+) True G29803
TU44169 lncRNA upstream 179287 18967387 ~ 18967714 (+) True G29797
TU44148 lncRNA upstream 214311 18932319 ~ 18932690 (+) True G29777
XR_006250682.1 lncRNA upstream 239177 18903235 ~ 18907824 (+) True LOC122343164
XR_006250695.1 lncRNA downstream 219136 19369771 ~ 19371889 (+) True LOC122343175
XR_006250711.1 lncRNA downstream 255268 19405903 ~ 19406459 (+) True LOC122343189
XR_006250720.1 lncRNA downstream 263826 19414461 ~ 19414983 (+) True LOC122343198
XR_006250725.1 lncRNA downstream 362438 19513073 ~ 19513595 (+) True LOC122343203
TU44214 lncRNA downstream 536222 19686857 ~ 19692608 (+) True G29831
XM_043236049.1 mRNA upstream 79118 19064025 ~ 19067883 (+) True LOC122342238
XM_043236046.1 mRNA upstream 184027 18960662 ~ 18962974 (+) True LOC122342236
XM_043237335.1 mRNA upstream 193402 18950727 ~ 18953599 (+) False LOC122343037
XM_043237337.1 mRNA upstream 193402 18950924 ~ 18953599 (+) True LOC122343037
XM_043237336.1 mRNA upstream 193402 18950924 ~ 18953599 (+) False LOC122343037
XM_043236051.1 mRNA downstream 114720 19265355 ~ 19268050 (+) True LOC122342242
XM_043236055.1 mRNA downstream 294926 19445561 ~ 19449833 (+) True LOC122342246
XM_043236059.1 mRNA downstream 553264 19703899 ~ 19706327 (+) True LOC122342253
XM_043237387.1 mRNA downstream 595099 19745734 ~ 19750074 (+) True LOC122343071
XM_043237388.1 mRNA downstream 595099 19745734 ~ 19750074 (+) False LOC122343071
TU43926 other upstream 260599 18883179 ~ 18886402 (+) True G29642
TU43756 other upstream 685684 18436460 ~ 18461317 (+) True G29545
TU43729 other upstream 845812 18300415 ~ 18301189 (+) True G29526
TU42966 other upstream 2672620 16473898 ~ 16474381 (+) True G28982
TU42861 other upstream 3161275 15985219 ~ 15985726 (+) True G28899
TU44195 other downstream 139585 19290220 ~ 19342911 (+) True G29814
TU44225 other downstream 580627 19731262 ~ 19786128 (+) False G29835
TU44230 other downstream 595106 19745741 ~ 19747442 (+) False LOC122343071
TU44267 other downstream 887303 20037938 ~ 20040195 (+) False LOC122343063
unassigned_transcript_309 other downstream 912019 20062654 ~ 20062727 (+) True trnam-cau_2